LOC103047439 (zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017)


Basic Information

Item Value
gene id LOC103047439
gene name zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11016029 ~ 11080184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24180
GGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGGTACTGGGTGGATCAGGTTGTCTCTATACTTGCTATACATCTTGTCATTATTGCTCCTGTCCtgccttctctttctctgtgctcAGGAGGAATGAGAGTCTGGTGtgtaaacaca
>TU24181
GGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGGTACTGGGTGGATCAGGTTGTCTCTATACTTGCTATACATCTTGTCATTATTGCTCCTGTCCtgccttctctttctctgtgctcAGGAGGAATGAGAGTCTGGTGtgtaaacaca
>TU24182
GGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGcttcatttgaattcaaaaatGTGATGGACACGCCCACACGCGGCAACCAAGAGGAGCAGCTGAATGCGTTGaagaaaagtgccagtggacacgtaCCATTAGAAGTCTTGTCCAGGTCTTGCTCCCACCCCAACGACCTGCCAGTCCAGGGGAACAAACTTATTGATTGTGTCCTGGTTGGTGTAGTTTGGTTTTATCAAGATAATTGTTGTCTGCTGGAGGTTTGATGGTGTTGTTAGCCACTGTGCAACAGGCATCTATTGGCTGTTGTATCAGAGCTGAGGATccagcactttcctctgagtgcactgGCTACCTGGCgtcagttcaaaaagaggtggcgGCTGATTTCACATTTATCACAGCAGGCATGTGTTTGTCTTCACTCATCCTAATGCACCTGGAGAATTGCAGTTGTAGGGTAGTTCTAGGTGTATGTGGGACAattggcatttttattattctaactTAATGAGAGAATTGgggaataaataataatctctTAATATtgtcttcttaaaaaaaaaacctttgtatTTAGTCAGGTGACCTGTCAACCGTGTGACCTGAAAGCAGCAACTCAAACCACCAAGCCAAACATGCAACTCGAGCAGCTTgtattaaagaaaaatcattGTTCATTAATCATAATCGAGGTATAATGTTTCAGTTTTCCTAACACCTTCGTCTTGTAAGCCACACTGTATGTATGTCAGTTTTTTCAGAAAGTCTGGTGGCTTTTGTCACTTAATGTGACTTAGACACCTACTTACTTGCATTCAAAACAGTCAGCCACAGTGTGTtatattatttatctatttatccatcTTCTGTTCTGCTTCTTGCTGGTCAAGTACCTGATCATTCTAGAGCCTACTATAATTATAACAAACAATGCAACAAAAAGTCCATCATAAAACAGTGATCTGAGACTGGAGAAAATcacaatataattattttatttgctacAAACTACTTTAGGTGAAATATAGAGTAACATTAAGAAAAGCAGgcttttttccagtgcagtgatTCTATATTGCTGTGCAAATCTGATTTGTTATCTTGGTGTCCTGGCAACTGGTTAAGTAGTTTCCTGTTGGATGATTAAATCAGAAATTGTTACTTGTGGCAGTATAGATGGCTTATCATTTAGTACTATGGCTGTACCATAGGGTATACAAAaacattgttataatttaaGAAACAACAAAAGTAATCCATCATTTGATTTTTTGTAAACTAACTTTTTATATTCTGCCTTATAGTACTGTGGTACACttttgttacattgtttaaTCTTGGTAAGTTATTGTTGTTtacaaagtatataaaaaattctcttaaatgcttgaaactgttatttatttatactgaataaa
>XM_022680304.1
TTCCGTTTCCTGGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGGTACTGGGTGGATCAGGTTGTCTCTATACTTGCTATACATCTTGTCATTATTGCTCCTGTCCtgccttctctttctctgtgctcAGGAGGAATGAGAGTCTGGTGCCTGAATATTTACATAGTTCCTGCTGATTTTTCAAAAGGGGTGAAGTGTTGATATCGCATAGAAAAGCATCCTAAAGATTTTCAAA
>XM_022680315.1
TTCCGTTTCCTGGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGGTACTGGGTGGATCAGGTTGTCTCTATACTTGCTATACATCTTGTCATTATTGCTCCTGTCCtgccttctctttctctgtgctcAGGAGGAATGAGAGTCTGGTGCCTGAATATTTACATAGTTCCTGCTGATTTTTCAAAAGGGGTGAAGTGTTGATATCGCATAGAAAAGCATCCTAAAGATTTTCAAAGGT
>XM_022680318.1
AAAGCCCACAATTCCGTGTGATTTCCGTTTCCTGGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGGTACTGGGTGGATCAGGTTGTCTCTATACTTGCTATACATCTTGTCATTATTGCTCCTGTCCtgccttctctttctctgtgctcAGGAGGAATGAGAGTCTGGTGCCTGAATATTTACATAGTTCCTGCTGATTTTTCAAAAGGGGTGAAGTGTTGATATCGCATAGAAAAGCATCCTAAAGATTTTCAAAGGTAA
>XM_022680321.1
ATTTCCGTTTCCTGGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGcttcatttgaattcaaaaatGTGATGGACACGCCCACACGCGGCAACCAAGAGGAGCAGCTGAATGCGTTGaagaaaagtgccagtggacacgtaCCATTAGAAGTCTTGTCCAGGTCTTGCTCCCACCCCAACGACCTGCCAGTCCAGGGGAACAAACTTATTGATTGTGTCCTGGTTGGTGTAGTTTGGTTTTATCAAGATAATTGTTGTCTGCTGGAGGTTTGATGGTGTTGTTAGCCACTGTGCAA

Function

symbol description
zswim7 Predicted to enable zinc ion binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Shu complex. Orthologous to human ZSWIM7 (zinc finger SWIM-type containing 7).

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24180 False 437 TUCP 0.48 6 11016029 11080151
TU24181 False 427 TUCP 0.48 6 11016029 11080151
TU24182 True 1694 lncRNA 0.51 5 11072129 11080151
XM_022680304.1 False 514 mRNA 0.47 6 11033181 11080162
XM_022680315.1 False 527 mRNA 0.48 6 11033178 11080162
XM_022680318.1 False 475 mRNA 0.47 6 11033176 11080184
XM_022680321.1 False 575 mRNA 0.49 5 11073261 11080164

Neighbor

gene id symbol gene type direction distance location
LOC103044364 LOC108412379 coding downstream 63930 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 675840 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 737696 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 758156 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 897421 10103179 ~ 10118608 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 267471 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 300818 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 321332 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 487780 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 516184 11596368 ~ 11606026 (-)
G17859 NA non-coding downstream 160958 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 472422 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 672766 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 717372 10293586 ~ 10298657 (-)
G17796 NA non-coding downstream 745405 10269491 ~ 10270624 (-)
G17929 NA non-coding upstream 66221 11146405 ~ 11147408 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 699848 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 706048 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 799568 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 883840 11964024 ~ 11970718 (-)
G17792 NA other downstream 768711 10246675 ~ 10247318 (-)
mak mak other downstream 1006878 9995145 ~ 10009151 (-)
G17638 NA other downstream 1453304 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 2129712 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 3008409 7924929 ~ 8007620 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 5296 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 355252 11435436 ~ 11595523 (-)
G18037 NA other upstream 604803 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 701328 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1686915 12767099 ~ 12780581 (-)

Expression


Co-expression Network