LOC107197924


Basic Information

Item Value
gene id LOC107197924
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11076238 ~ 11083799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24200
TCACACAACCTGTTAACAACACACCGCCTACACCTGCAATACTCACCTACCCTGCTCACGTTcagggtttttatttatttatgaataacAAGTTTACATCCTCTACATAGAACACAGTTttgttacatttcatttatgttgtttatttgttctttttaatGCAATGTGTGCAAAAACAAAGTAACACATAGGAGTgttagaaaatattgatataaggaagtatcacaatattttgcacGCTTTGCAATAGTGTATCGATTTTTAAAAACCCGGTGTAGATCGCAGTTTTGTACTCtcattagatcccactgttctgataaaaagtaaaaaaaaattactctaTGCTAGTGATTTAAACAACTGCAATATATCACTTTGCTTACAGTAtgagaatatacagctctggaataaataagagaccacttaaaaattaagatttttttttttttttttttgttattttaccaaattgaaaacctctggaatataattatgAGGataatggatgatcacaagccataaaaaccaagctgaactgcttgaatttttgcaccaggagtggcataaagttatataaaagcagtgtgcaagactggaggagaacatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtcttttttgttatttcagccatttctcattttctgcaaataaatgcacaccCATTTATCtattcactctcacacacctgtTCAGagacattttattaaaagacCACTATGCATTAAAGTGGAAGCACAGCTCAAACAACCCCCCACCCCAGACTAATTAAGACACGCGACCTCTTCACGCGCGCCTATAGTGAAAGTTTCGAGACTGCAGCCCCGGGGACGAGGGGTCAGAGCCATCAATCAACATCCCCTAAACACTTAAGGCCTCCTATAAAAGCCCACCCCACCTCTGCTCCCCACAACTCATCACaatcattcatacacacacacacacacacactcctccacacGACCCCcttcatccatacatccatcacCATGCAGAAGGACCTGAGCACCCCCACCAGCCGCTTCTTCATATGGCGGGACTACCTAAATCTGAGGGACACCCTGGAGCGCGTGCTCCAGCAGTCCAGGCTCGAGGATGTGGGACCCCAGCCCCCCACTCCCATATCCCCCGACCACTTCCATCTTACTGCCCGGGACAGAGCGAGAAGCCGGGGGCCAGCAGGACCAGGGAGAGGCGCTGTCTCAGAGCAGCGGAGGAGCGGAGAGTGGAGAAGAAtTGTTTTATGCACCGGTCCGAACCGAGACGCCCCCTAGTGTCCGCGAGGGCTCCTGCGCCTTCTGCCGGCGGAACGGTGAGAGCACCGAGGTGTACCGGAGCCACCGGCTGCGCAGGCGGGACGGCAGGGTGATGTGCCCCGTGCTGCGGAGCTACATGTGCCCGCTGTGCGGAGCCACCGGAGACACCGCGCACACCCGCCTCTACTGCCCCAACAGGAGCGACACAGAGCCGCGCCGCAGCGCCGCCCACAGagaaaagacagtgagagaaaaagcGCGTGACTGAATCACTACTGCACACGAGTCTCAAACACCACCATAAGTGCAATGGAGTTCATGTGCAGGTTTTAAACAGTGTGTTCTTCTCCACAGAGCTTCTGTACAGTTTATATAAAGCCTTATACAAAGCCCCAAGAAACATGCGCGGCTGCACGCTGTTCTGAAGAGTTTTATACAGGaaattttttttcatgttttttctgttgtttgctgttttgtacaaaataaagaaaagttttCCTAATGCAAAACATCTCGCTCTCTGTCAGTCTAAACTGAGAATTCAGGATGTCAATAACTGTTTATTGCTTTAACTATATCAAAAAACAGTGAACAAAAGTAGagtataataataactaaaaacatagaCGTAGCTAAATAAGTTAAGTATGATAGTCTACCTTATTATTAAAGCTAATGCAATAACcacaaactaaattaaaataatgtttgatacacctaattaaaataattaaagttaCAACCCAGTTAGTTTTTTCCTCCTCTCCTGTAATAAATAGCCACACTTCTTATTGCCTCTGTATTTAGCTACAGATAGCACTTCTCCACTAGATGGAGCCACTGACTCatatttaattcataaaataaaacctttattttttatacttcaaAATATGATTAGACTAGATATAAACGTTAAGCTGTGCTTttgcttttctctcttctctcgctttgatttattgtacattgcatgcattaataaaaacttaaattatataaaagtgtGCAATATTATAGAGTAAAATCTACTTAGCAAACAGAGATAGTTATCACAGTGGTGTCTACTTCCTTATCTTCTTCATaagattacattaaaaaaaaaattctaaacatttaaacagtatGGTTTAAATACTGGTGATGGCTAATTGGCTTTGCAGCTCAGTGCTCATGTTGGATGGCGCTCCATCACTGCAGAGAAAGCGCTggactgtggagcagtggagattTATACCTTTCTGTTCTGCGTGTGGAATAAGGCCtattatagtttatagagattacacaagctgtgtgtgctAATTGTGTGCAGTCT
>XM_022667597.1
ttttctgcaaataaatgcacaccCATTTATCtattcactctcacacacctgtTCAGagacattttattaaaagacCACTATGCATTAAAGTGGAAGCACAGCTCAAACAACCCCCCACCCCAGACTAATTAAGACACGCGACCTCTTCACGCGCGCCTATAGTGAAAGTTTCGAGACTGCAGCCCCGGGGACGAGGGGTCAGAGCCATCAATCAACATCCCCTAAACACTTAAGGCCTCCTATAAAAGCCCACCCCACCTCTGCTCCCCACAACTCATCACaatcattcatacacacacacacacacacactcctccacacGACCCCcttcatccatacatccatcacCATGCAGAAGGACCTGAGCACCCCCACCAGCCGCTTCTTCATATGGCGGGACTACCTAAATCTGAGGGACACCCTGGAGCGCGTGCTCCAGCAGTCCAGGCTCGAGGATGTGGGACCCCAGCCCCCCACTCCCATATCCCCCGACCACTTCCATCTTACTGCCCGGGACAGAGCGAGAAGCCGGGGGCCAGCAGGACCAGGGAGAGGCGCTGTCTCAGAGCAGCGGAGGAGCGGAGAGTGGAGAAGAAtTGTTTTATGCACCGGTCCGAACCGAGACGCCCCCTAGTGTCCGCGAGGGCTCCTGCGCCTTCTGCCGGCGGAACGGTGAGAGCACCGAGGTGTACCGGAGCCACCGGCTGCGCAGGCGGGACGGCAGGGTGATGTGCCCCGTGCTGCGGAGCTACATGTGCCCGCTGTGCGGAGCCACCGGAGACACCGCGCACACCCGCCTCTACTGCCCCAACAGGAGCGACACAGAGCCGCGCCGCAGCGCCGCCCACAGGCGGGACACCCGCGCTCcgtaaaacacagagaaaagacagtgagagaaaaagcGCGTGACTGAATCACTACTGCACACGAGTCTCAAACACCACCATAAGTGCAATGGAGGTTTTTCCCTAAAGCTAAAGTTCAGCTCTGTGGAGTTCATGTGCAGGTTTTAAACAGTGTGTTCTTCTCCACAGAGCTTCTGTACAGTTTATATAAAGCCTTATACAAAGCCCCAAGAAACATGCGCGGCTGCACGCTGTTCTGAAGAGTTTTATACAGGaaattttttttcatgttttttctgttgtttgctgttttgtacaaaataaagaaaagttttCCTAATGCAAAACATCTCGCTCTCTGTCAGTCTAAACTGAGAATTCAGGATGTCAATAACTGTTTATTGCTTTAACTATATCAAAAAACAGTGAACAAAAGTAGagtataataataactaaaaacatagaCGTAGCTAAATAAGTTAAGTATGATAGTCTACCTTATTATTAAAGCTAATGCAATAACcacaaactaaattaaaataatgtttgatacacctaattaaaataattaaagttaCAACCCAGTTAGTTTTTTCCTCCTCTCCTGTAATAAATAGCCACACTTCTTATTGCCTCTGTATTTAGCTACAGATAGCACTTCTCCAC

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24200 True 2680 TUCP 0.55 5 11076238 11083799
XM_022667597.1 False 1511 mRNA 0.49 2 11080682 11083053

Neighbor

gene id symbol gene type direction distance location
LOC103044364 LOC108412379 coding downstream 124139 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 736049 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 797905 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 818365 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 957630 10103179 ~ 10118608 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 263856 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 297203 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 317717 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 484165 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 512569 11596368 ~ 11606026 (-)
G17921 NA non-coding downstream 15343 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 221167 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 532631 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 732975 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 777581 10293586 ~ 10298657 (-)
G17929 NA non-coding upstream 62606 11146405 ~ 11147408 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 696233 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 702433 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 795953 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 880225 11964024 ~ 11970718 (-)
G17792 NA other downstream 828920 10246675 ~ 10247318 (-)
mak mak other downstream 1067087 9995145 ~ 10009151 (-)
G17638 NA other downstream 1513513 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 2189921 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 3068618 7924929 ~ 8007620 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 1681 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 351637 11435436 ~ 11595523 (-)
G18037 NA other upstream 601188 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 697713 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1683300 12767099 ~ 12780581 (-)

Expression


Co-expression Network