G17929


Basic Information

Item Value
gene id G17929
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11146405 ~ 11147408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24203
GTGAAGGAAAATCAGCAGTGGAGAAAGGTGGCTGAACTTAGAAACTTTAAAGACAAGTTGTGTGGCAATGTTCTGGAACTGCTAATTCTGTTATATCTGTCTATCAGCACTCGAGTTGGTTTTATAGTTGTACAGCTGTGTTATTCATCAGGCATTTGTCaaattctttatatttttatgagttaaggaacaaaacaaaataatactgtaaaactgtTGATCAACATGAAACATTGATAATAAGGCTTATGTAATTAGTGACCTTATGCCTTTGAGTGAATACTTTCTGCATTAGCAGGTACGGTAGCAGATTTACTTGGATTGTCTATTAGAGATGCCTTATAGATGCTCACCCAACATTCAGATGACATTCAACaaacattcaactgaatatctaacaaatgcaactgaactctcagctgaatgtaaatacatttaaagcttAAACATTAATTCAACagaaaatcatttacattcaactaaaagttcagttgcatttaatgaacatttagttgaatgttaCTTGAGGCTCTACAAGGCATTAACAATGTAATAAAGTGTTATTGCATGTGCATCTGTAACATAATAACTCTGACCTGGTCACTGTGCTGCTTTATTGGCCCTCAGACCTGGACCTCACCCCACCCGGACCCCCCCTCCACTGTCCCTGCGGAGGTTCACTAGGCCGATCTGATCCAAGACCCCTCTCAGCTTTGCCCTTTGACCTCTGACAGCCTTGTGTTGTTAGCCTTTACAACATGCCTGCCCCCCTGCTcatttctccttctctccttctctctctttctctccttctctctctctctctctctctctctgctcatgctttctaatctatctaatcCGTAACCAGATCTGTTTGAACCCTTTCCCAAAGGATGGAGGGAGGtagagaggagtgaaggagaaagAAGTGGGGGGGAAGAGAACAAAGCTGACTTTTCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24203 True 966 lncRNA 0.40 2 11146405 11147408

Neighbor

gene id symbol gene type direction distance location
LOC103044364 LOC108412379 coding downstream 194306 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 806216 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 868072 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 888532 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 1027797 10103179 ~ 10118608 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 200247 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 233594 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 254108 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 420556 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 448960 11596368 ~ 11606026 (-)
G17921 NA non-coding downstream 85510 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 291334 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 602798 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 803142 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 847748 10293586 ~ 10298657 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 632624 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 638824 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 732344 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 816616 11964024 ~ 11970718 (-)
G18154 NA non-coding upstream 988012 12135420 ~ 12135738 (-)
LOC107197924 NA other downstream 62606 11076238 ~ 11083799 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other downstream 66221 11016029 ~ 11080184 (-)
G17792 NA other downstream 899087 10246675 ~ 10247318 (-)
mak mak other downstream 1137254 9995145 ~ 10009151 (-)
G17638 NA other downstream 1583680 9562427 ~ 9562725 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 288028 11435436 ~ 11595523 (-)
G18037 NA other upstream 537579 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 634104 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1619691 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 1663768 12811176 ~ 12816601 (-)

Expression


Co-expression Network