G18085 (pex12,LOC107681885,LOC107710733,LOC107587685)


Basic Information

Item Value
gene id G18085
gene name pex12,LOC107681885,LOC107710733,LOC107587685
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11780032 ~ 11781320 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24439
attacgAACAGCAAACATCATGCTTTTATTTCAAGAACATGAGAGAGGTTTCAATAAAAGCGAATGGGGGCAATTGTGTAGAGCTGTTTCAGAACAAACTGTCTAGTTTTTAGAAGAATATCTCATGGaatgttaattttataaaaatactgggttaaaacatttttggcaAGCTTGCTGGGAACGGCtagagtattttattttttaatcactgaGATGATTTAAGGGGTGTGTGTGCTTGCAACAGAATTCTAAAAAGAGTCCTTTTTATGGGTGTTTCAATAAAGATAAACATGTAAAGGATGCCACTTTTCTCAACAGTTAAGATGCTACTGTGTATATCCCAAGACAACCAAATTATTAACTTTTATCTTAAATGCATATATAACTCATTGTAACTGCTTTGAGAAATGTCTCACTTCAAAAGTGAGGACCAAGCCCCTGCAACAGCATGCTGCAGGTGGAGCATTAATGTTGCTCAACAGAACCCTAGGAGTTGTATATTGGCCTCGATTTTAGATGTGGGGTCTCCAAAGCAGATTTTTGGGCATAACTTTCATTTGCATAGTAGCTGAGTCACACAACAATTTTCTTGCTCATGTAGTTTCAGAGAATGCCTTTCTCCAAAGTACAATGTCACTGAACCTTGCTAAAGCCTTCACATTTTTCACAGCTTATGAGTTTTTATATTCAAAAGCTCATCCAGTTAGTTCAGCAATAAAAATTGGCATTATTCATGACTTAAATCAACAGTTTTGGTAATTTACAAGTACACAAAACTGATCTTGTTTCCATAAAGATTACTTTGCACTGTCATAGGGGTAGGTCTTGTAAGTGAATTATCAGGAAATGCACAATAAATGCTGCAAAACCACTTGAACTCTACCCTTCCGGTGAATAGATTTTGATTAAATGCTGCAGTTCAGAGGGATAGCCTGTGAGGGGACATCGGTGGTTGGCTTTGACGTACATGTATATGCATCGATAGCAGAAGACATAGCCTGAAGTAGCCAGGGCCGTGTCATTGCTGCGCAACTTCCTGCACAGTGGGCAGACTTTATTGTTTGTGTGAGAGTCCTGGTCCTCCAGATGAAGTGGGGGTGGAGGTGTAGGGTGGGATGTGAGCGACTTTATGTTGCTCTGGTTCTCTGAGGAGTACCACCACTCCAGAAACTGCAGGaaaaacacacccagagagagactAGTGGAGAGAGATACTGCCACGCCTCCAACCATTGTGGACAATACACGATGCAGCTTCTCTCC

Function

symbol description
pex12 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein import into peroxisome matrix and protein monoubiquitination. Predicted to act upstream of or within protein targeting to peroxisome. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be integral component of peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 3A. Orthologous to human PEX12 (peroxisomal biogenesis factor 12).

NR:

description
peroxisome assembly protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24439 True 1266 lncRNA 0.40 2 11780032 11781320

Neighbor

gene id symbol gene type direction distance location
ap2b1 ap2b1,LOC107685655,LOC100380745 coding downstream 2718 11721343 ~ 11777314 (-)
rasl10b rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding downstream 64508 11688946 ~ 11715524 (-)
LOC103040613 hnrnpul1l,hnrnpul1,LOC108413504,LOC108259896 coding downstream 115791 11652941 ~ 11664241 (-)
sympk sympk,LOC107681888 coding downstream 129482 11638731 ~ 11650550 (-)
LOC103042846 NA coding downstream 143814 11630788 ~ 11636218 (-)
bckdk bckdk,LOC107681895,LOC107685622,LOC106603456 coding upstream 16784 11798104 ~ 11827347 (-)
lrwd1 NA coding upstream 47784 11829104 ~ 11845696 (-)
alkbh4 alkbh4 coding upstream 63460 11844780 ~ 11847750 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding upstream 68383 11849703 ~ 11852843 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding upstream 138148 11919468 ~ 11956437 (-)
G17929 NA non-coding downstream 632624 11146405 ~ 11147408 (-)
G17921 NA non-coding downstream 719137 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 924961 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 1236425 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 1436769 10342796 ~ 10343263 (-)
G18087 NA non-coding upstream 4912 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 98432 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 182704 11964024 ~ 11970718 (-)
G18154 NA non-coding upstream 354100 12135420 ~ 12135738 (-)
G18164 NA non-coding upstream 444489 12225809 ~ 12226389 (-)
G18037 NA other downstream 94641 11684987 ~ 11685391 (-)
LOC103044489 LOC103044489,LOC108428292 other downstream 184509 11435436 ~ 11595523 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 445514 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 696233 11076238 ~ 11083799 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other downstream 699848 11016029 ~ 11080184 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 192 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 985779 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 1029856 12811176 ~ 12816601 (-)
G18371 tagln,tagl,LOC108437045,LOC103026775,LOC108437046,LOC107749469,LOC107700246,LOC107548469,LOC107746372,LOC107710578 other upstream 1153981 12935301 ~ 13007435 (-)
LOC107197939 NA other upstream 1353397 13134717 ~ 13143478 (-)

Expression


Co-expression Network