LOC111191510 (LOC108414110,LOC108437066,LOC108442041,LOC108437065)


Basic Information

Item Value
gene id LOC111191510
gene name LOC108414110,LOC108437066,LOC108442041,LOC108437065
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 12767099 ~ 12780581 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24708
AGCTGAAACAGACTGTAAACACTCTTAAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGttGCAGCAGGAGAGATTTTACCCTCAGAACCAAAAACCAGAGAAGACTTTCTGCAgtATTTCTGTCGGCTGACTCTGGATCCAAACACAGCTTATcgttctctcattctgtctgaGGAGAACAGAGTGGTGAAGAGGAGTAATAAAGTTCAGCCATACTCTCatca
>TU24712
AGCTGAAACAGACTGTAAACACTCTTAAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGGTGAGagctgctgtcctgctgtcagACAGAAGAATACaagttattttattcagatCACTGTAGAGAAACAAA
>TU24716
AGCTGAAACAGACTGTAAACACTCTTAAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGATTTCTGTCGGCTGACTCTGGATCCAAACACAGCTTATcgttctctcattctgtctgaGGAGAACAGAGTGGTGAAGAGGAGTAATAAAGTTCAGCCATACTCTCatca
>TU24718
TCTGGCCAAACACCTCAATGACAATgacaatgattaaaaaatataatatgttgtactgactgtgtatgtgtgtgtgtaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattgtgtgtgtgtgtgtgtaattgtgtgtgtgtaattgtttgtgtgtgtgtgtgtgtgtgtgtgattgtgtgtgtgtaattctgtgtgtgtgtaattctgtgtgtatgtgtatgtgtatgtgtgtgtgtctctgtgcacGTGTGTAACAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGCTGCAGCAGTCCAGATTTTACCCTCAGAACCAAAAACCAGAGAAGACTTTCTGCAGAATTTCTGTCGGCTGACTCTGGATCCAAACACAGCTTATcgttctctcattctgtctgaGGAGAACAGAGTGGTGAAGAGGAGTAATAAAGTTCAGCCATACTCTCatca
>TU24719
AGCTGAAACAGACTGTAAACACTCTTAAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGATTTCTGTCGGCTGACTCTGGATCCAAACACAGCTTATcgttctctcattctgtctgaGGAGAACAGAGTGGTGAAGAGGAGTAATAAAGTTCAGCCATACTCTCatca
>TU24721
GTTCAGAGTAAATGAAAGTGATCTCAGAGTGCTGCTCTCTCTCAGTCTAGAAGTGCAGGAAAATGGCAGAGGCCAGTATTTCAGTAGATCACGATCAGTTCAGCTGTCCAGTCTGTCTGGATCTGCTGAAGGATCCAGTGGCTGTTCCCTGTGGACACAGTTTCTGTATGGTGTGTATTAATGGCTGCTGGGATCGGGAGGATCAGAGGGGGATCTACAGCTGCCCCCAGTGCAGAGAGACCTTCACTCCAAGGCCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGgagaaactgaagaagaacaCAGAACTCCAAGCTGCTTCTCCTGCTCCCCGTTACGCTGAAGCTGGAGATGTGGAGTGTGATTTCTGCACCGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGGCCTCCTTTTGTGAAGCTCATCTTAAACCTCACTATGAAGTTCCTGGATTGAAGAAACACAAGCTGGTTAAAGCGTCCACCCAGCTCCAAGAGAAGATCTGCTCTCAGCATGACAGACTGATCGAGATCTACTGTCGTACTGATCAGAGCTGTATCTGTTATTTATGTACAATGGATAAACACAGGGGTCATGATACAGTTCCTGCTACAACAGAAAGAACTGAGAAACAGG
>XM_022666655.1
AGTCTAGAAGTGCAGGAAAATGGCAGAGGCCAGTATTTCAGTAGATCACGATCAGTTCAGCTGTCCAGTCTGTCTGGATCTGCTGAAGGATCCAGTGGCTGTTCCCTGTGGACACAGTTTCTGTATGGTGTGTATTAATGGCTGCTGGGATCGGGAGGATCAGAGGGGGATCTACAGCTGCCCCCAGTGCAGAGAGACCTTCACTCCAAGGCCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGgagaaactgaagaagaacaCAGAACTCCAAGCTGCTTCTCCTGCTCCCCGTTACGCTGAAGCTGGAGATGTGGAGTGTGATTTCTGCACCGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGGCCTCCTTTTGTGAAGCTCATCTTAAACCTCACTATGAAGTTCCTGGATTGAAGAAACACAAGCTGGTTAAAGCGTCCACCCAGCTCCAAGAGAAGATCTGCTCTCAGCATGACAGACTGATCGAGATCTACTGTCGTACTGATCAGAGCTGTATCTGTTATTTATGTACAATGGATAAACACAGGGGTCATGATACAGTTCCTGCTACAACAGAAAGAACTGAGAAACAGaatcagctgaaagagatGCAGAAGAAACTCCAGCAGAGAACCCaggagaagcagaagaagctgCGGGAGCTGAAACAGACTGTAAACACTCTTAAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGCTGCAGCAGTCCAGATTTTACCCTCAGAACCAAAAACCAGAGAAGACTTTCTGCAGAaTTTCTGTCGGCTGACTCTGGATCCAAACACAGCTCATaattctctcattctgtctgaGAAGAACAGAGTGGTGAAGTTTAGTAATAAAGATCAGTCATACTctgatcatccagagagatttgatAGCTGGAATCAGGTGTTGAGtaaggagagtgtgtgtggacgctgttactgggaggtTGAGTGGAGGGGAGGGTATGTGTACATCTCAGTCTCATATAAAGGGATCAGTAGGAAAGGAGGGGGTGCTGATTGTGGGTTTGGATACAACAGTCAGTCCTGGAGTCTATActgttcttcctctctctctttttaccacAACAACATTCAGACTGTTCTCTCAGCTCCTCCATCCTCCAGaataggagtgtatgtggatcACAGTGCAGgaactctgtccttctacagcgTCTCTGATACAATGACCctcctacacacactccacaccacattcACTCAGCCCCTCTACGCTGGATTCTATGTTTATGGTAGTGAATCATCTGTGAGGTTATGTGATAAAAACTAATCATCTATTAAATTGTGGTCACTTTATAAATAGATGTATAAAATAACTCTCACTGATTTATTAATGATCCACATTTTTATAAAGATCATTTCCAGACTGTGTGAAAGTGAACACTGGTGATGGTGGGAGGAGTTAAAGGTGAGAGTGAGAGTTCAGCTCAGTGTTAGAGCTGCTCTTCAGTATAGAAGTGTGGAATGGGAGGAGATTTTATTACtatataaagataaagaacAGTTAGTGAATTATATGTAGattcatatataaatacatatattgtttattctcgtatgatttaaacacactgctgcagattcacattttgattttatgtgatcatcaaaatattgtgttaaaatatttacagtaatatGCAGATTAGACTATAAGCTTCATTAAGAGAAGattgaaaatggaaaaatgtcatTGTACAATA
>XM_022666660.1
AGTCTAGAAGTGCAGGAAAATGGCAGAGGCCAGTATTTCAGTAGATCACGATCAGTTCAGCTGTCCAGTCTGTCTGGATCTGCTGAAGGATCCAGTGGCTGTTCCCTGTGGACACAGTTTCTGTATGGTGTGTATTAATGGCTGCTGGGATCGGGAGGATCAGAGGGGGATCTACAGCTGCCCCCAGTGCAGAGAGACCTTCACTCCAAGGCCTGTTCTACGCAGAAACAACATGCTGGCTGAAGTGGTGgagaaactgaagaagaacaCAGAACTCCAAGCTGCTTCTCCTGCTCCCCGTTACGCTGAAGCTGGAGATGTGGAGTGTGATTTCTGCACCGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGGCCTCCTTTTGTGAAGCTCATCTTAAACCTCACTATGAAGTTCCTGGATTGAAGAAACACAAGCTGGTTAAAGCGTCCACCCAGCTCCAAGAGAAGATCTGCTCTCAGCATGACAGACTGATCGAGATCTACTGTCGTACTGATCAGAGCTGTATCTGTTATTTATGTACAATGGATAAACACAGGGGTCATGATACAGTTCCTGCTACAACAGAAAGAACTGAGAAACAGaatcagctgaaagagatGCAGAAGAAACTCCAGCAGAGAACCCaggagaagcagaagaagctgCGGGAGCTGAAACAGACTGTAAACACTCTTAAGCGCTCTGCACAGgcagcagtggaggacagtgagaggaTCTTTACTGAGCTGATCCGCTCCATTGAGAAAAAGCGCTCTGAGGTAACAGAGCTGATCAGAGATCAGGAGAAGGCTGAACTGAGTGGAGCTGAAGAACTCCTGGAGAAACTGCAGCAGGAGATGGCTGATCTAAAGAGGAGACacactgagctggagcagctttcACACACAGAGGATCACATCCATTTCCTCCAGAGTTTCcagtctctctgtgtctcttctgGATCTGAGGACTCTCCCAGCATCACTGTCCATCAACATCCCTCATTTGATGGAGTGAGGAAATCTCTCTCTGAGCTGAAAGAGCGACTAGAGGAATTCTGCAGAGAGGAATTCAGGAAAATCCCTCCACATGaTTTCTGTCGGCTGACTCTGGATCCAAACACAGCTCATaattctctcattctgtctgaGAAGAACAGAGTGGTGAAGTTTAGTAATAAAGATCAGTCATACTctgatcatccagagagatttgatAGCTGGAATCAGGTGTTGAGtaaggagagtgtgtgtggacgctgttactgggaggtTGAGTGGAGGGGAGGGTATGTGTACATCTCAGTCTCATATAAAGGGATCAGTAGGAAAGGAGGGGGTGCTGATTGTGGGTTTGGATACAACAGTCAGTCCTGGAGTCTATActgttcttcctctctctctttttaccacAACAACATTCAGACTGTTCTCTCAGCTCCTCCATCCTCCAGaataggagtgtatgtggatcACAGTGCAGgaactctgtccttctacagcgTCTCTGATACAATGACCctcctacacacactccacaccacattcACTCAGCCCCTCTACGCTGGATTCTATGTTTATGGTAGTGAATCATCTGTGAGGTTATGTGATAAAAACTAATCATCTATTAAATTGTGGTCACTTTATAAATAGATGTATAAAATAACTCTCACTGATTTATTAATGATCCACATTTTTATAAAGATCATTTCCAGACTGTGTGAAAGTGAACACTGGTGATGGTGGGAGGAGTTAAAGGTGAGAGTGAGAGTTCAGCTCAGTGTTAGAGCTGCTCTTCAGTATAGAAGTGTGGAATGGGAGGAGATTTTATTACtatataaagataaagaacAGTTAGTGAATTATATGTAGattcatatataaatacatatattgtttattctcgtatgatttaaacacactgctgcagattcacattttgattttatgtgatcatcaaaatattgtgttaaaatatttacagtaatatGCAGATTAGACTATAAGCTTCATTAAGAGAAGattgaaaatggaaaaatgtcatTGTACAATA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24708 False 589 TUCP 0.47 6 12767099 12779529
TU24712 False 495 TUCP 0.46 3 12778478 12779529
TU24716 False 532 TUCP 0.50 5 12767099 12779529
TU24718 False 822 TUCP 0.49 4 12767099 12779398
TU24719 False 520 TUCP 0.51 5 12767099 12779529
TU24721 False 657 TUCP 0.67 1 12779925 12780581
XM_022666655.1 True 2120 mRNA 0.44 6 12776372 12780538
XM_022666660.1 False 2063 mRNA 0.44 5 12776372 12780538

Neighbor

gene id symbol gene type direction distance location
LOC111191990 NA coding downstream 144343 12605627 ~ 12622756 (-)
LOC103036635 LOC108437067 coding downstream 237768 12526425 ~ 12529331 (-)
trnam-cau_4 NA coding downstream 475160 12291867 ~ 12291939 (-)
trnam-cau_2 NA coding downstream 476168 12290859 ~ 12290931 (-)
trnam-cau_1 NA coding downstream 476871 12290156 ~ 12290228 (-)
LOC103022019 arhgap35,LOC108437035,LOC108260288,LOC107596120,LOC105901059,LOC107663410,LOC107734134 coding upstream 9070 12789651 ~ 12809411 (-)
LOC103023038 NA coding upstream 39801 12820382 ~ 12841186 (-)
LOC103023882 LOC108437026,LOC108259866 coding upstream 74786 12855367 ~ 12875026 (-)
LOC103024197 NA coding upstream 103500 12884081 ~ 12897691 (-)
rnf214 NA coding upstream 152600 12933181 ~ 12944980 (-)
G18269 NA non-coding downstream 169219 12595342 ~ 12597880 (-)
G18252 NA non-coding downstream 242252 12524030 ~ 12524847 (-)
G18250 NA non-coding downstream 243173 12522503 ~ 12523926 (-)
G18249 dpf2,LOC101069539,LOC101161743,LOC107089855 non-coding downstream 258353 12503747 ~ 12508746 (-)
G18221 LOC108437058,LOC106603118 non-coding downstream 318175 12398547 ~ 12448924 (-)
G18296 NA non-coding upstream 1483 12782064 ~ 12782425 (-)
G18352 NA non-coding upstream 45214 12825795 ~ 12826172 (-)
G18358 LOC103023567,LOC108437039 non-coding upstream 63444 12844025 ~ 12853346 (-)
G18356 pafah1b2,LOC108437041,LOC107599209,LOC107663423 non-coding upstream 72860 12853441 ~ 12929350 (-)
G18369 apoa4 non-coding upstream 134845 12915426 ~ 12918394 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other downstream 970948 11781512 ~ 11796151 (-)
G18037 NA other downstream 1081708 11684987 ~ 11685391 (-)
LOC103044489 LOC103044489,LOC108428292 other downstream 1171576 11435436 ~ 11595523 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 1432581 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 1683300 11076238 ~ 11083799 (-)
fxyd2 NA other upstream 30595 12811176 ~ 12816601 (-)
G18371 tagln,tagl,LOC108437045,LOC103026775,LOC108437046,LOC107749469,LOC107700246,LOC107548469,LOC107746372,LOC107710578 other upstream 154720 12935301 ~ 13007435 (-)
LOC107197939 NA other upstream 354136 13134717 ~ 13143478 (-)
LOC107197937 LOC107197937 other upstream 364192 13144773 ~ 13161124 (-)
LOC103029040 LOC108414110,LOC108437066 other upstream 403657 13184238 ~ 13192681 (-)

Expression


Co-expression Network