Gene
RNA
| Item | Value |
|---|---|
| gene id | G57276 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 10257887 ~ 10258605 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU65262 | True | 287 | lncRNA | 0.44 | 3 | 10257887 | 10258605 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_10149267_10242850 | MGC130950, MAN1A2.L, MAN1A2 | coding | downstream | 15037 | 10149267 ~ 10242850 (-) |
| CI01000009_10137314_10138474 | MAN1A2, FAM46C | coding | downstream | 118362 | 10137091 ~ 10139525 (-) |
| CI01000009_10089124_10102162 | WDR3 | coding | downstream | 155725 | 10087937 ~ 10102162 (-) |
| CI01000009_09908895_09911939 | HAO2, HAOX2 | coding | downstream | 345849 | 9908583 ~ 9912038 (-) |
| CI01000009_09900049_09906784 | KLH13 | coding | downstream | 351103 | 9899709 ~ 9906784 (-) |
| CI01000009_10261399_10263994 | VTCN1 | coding | upstream | 1995 | 10260600 ~ 10263994 (-) |
| CI01000009_10271506_10292564 | NA | coding | upstream | 12140 | 10270745 ~ 10292564 (-) |
| CI01000009_10297628_10300270 | NA | coding | upstream | 39023 | 10297628 ~ 10301102 (-) |
| CI01000009_10305247_10317487 | NA | coding | upstream | 46572 | 10305177 ~ 10317744 (-) |
| CI01000009_10330884_10337327 | NA | coding | upstream | 72175 | 10330780 ~ 10337327 (-) |
| G57240 | NA | non-coding | downstream | 58468 | 10190610 ~ 10199419 (-) |
| G57245 | NA | non-coding | downstream | 113337 | 10142610 ~ 10144550 (-) |
| G57234 | NA | non-coding | downstream | 121117 | 10082118 ~ 10136770 (-) |
| G57247 | NA | non-coding | downstream | 122455 | 10115790 ~ 10135432 (-) |
| G57235 | NA | non-coding | downstream | 123167 | 10047417 ~ 10134720 (-) |
| G57035 | NA | non-coding | upstream | 44840 | 10303445 ~ 10304468 (-) |
| G57311 | NA | non-coding | upstream | 60114 | 10318719 ~ 10318989 (-) |
| G57283 | NA | non-coding | upstream | 180843 | 10439448 ~ 10442918 (-) |
| G57349 | NA | non-coding | upstream | 253811 | 10512416 ~ 10512647 (-) |
| CI01000009_08858198_08860555 | NA | other | downstream | 1397324 | 8856310 ~ 8860563 (-) |
| G55814 | NA | other | downstream | 1829875 | 8425821 ~ 8428012 (-) |
| G53515 | NA | other | downstream | 4752639 | 5502395 ~ 5505248 (-) |
| G52828 | NA | other | downstream | 6026418 | 4217420 ~ 4231469 (-) |
| CI01000009_03261739_03262843 | NA | other | downstream | 6995930 | 3261038 ~ 3262843 (-) |
| G59097 | NA | other | upstream | 2029612 | 12288217 ~ 12289518 (-) |
| CI01000009_13975122_13976026 | NA | other | upstream | 3716783 | 13975099 ~ 13978614 (-) |
| G59490 | NA | other | upstream | 3774959 | 14033564 ~ 14037873 (-) |
| G59811 | NA | other | upstream | 4603792 | 14862397 ~ 14887464 (-) |
| G59941 | NA | other | upstream | 4873499 | 15132104 ~ 15132503 (-) |
