Gene
RNA
| Item | Value |
|---|---|
| gene id | G56540 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 10290459 ~ 10292559 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU64387 | False | 593 | lncRNA | 0.48 | 6 | 10290459 | 10292559 |
| TU64388 | True | 380 | lncRNA | 0.49 | 3 | 10292015 | 10292559 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_10268535_10269640 | NA | coding | upstream | 20675 | 10268535 ~ 10269784 (+) |
| CI01000009_10103558_10119209 | GDAP2 | coding | upstream | 171239 | 10103558 ~ 10119220 (+) |
| CI01000009_09967529_09989449 | TBX15 | coding | upstream | 300992 | 9967384 ~ 9989467 (+) |
| CI01000009_09952526_09962840 | WARS2 | coding | upstream | 326180 | 9952526 ~ 9964279 (+) |
| CI01000009_09878612_09881564 | POPDC2 | coding | upstream | 408565 | 9878612 ~ 9881894 (+) |
| CI01000009_10319216_10329706 | PLCD4B | coding | downstream | 26657 | 10319216 ~ 10329836 (+) |
| CI01000009_10338738_10339712 | BCS1L | coding | downstream | 46179 | 10338738 ~ 10339774 (+) |
| CI01000009_10341830_10347798 | CYP27A1.2, CYP27A1.4, CYP27A7 | coding | downstream | 49271 | 10341830 ~ 10348005 (+) |
| CI01000009_10361969_10374788 | MCM3AP | coding | downstream | 69410 | 10361969 ~ 10375458 (+) |
| CI01000009_10376105_10382009 | LSS | coding | downstream | 83546 | 10376105 ~ 10382284 (+) |
| G56509 | NA | non-coding | upstream | 947 | 10288850 ~ 10289512 (+) |
| G56507 | NA | non-coding | upstream | 5935 | 10283073 ~ 10284524 (+) |
| G56392 | NA | non-coding | upstream | 30799 | 10258528 ~ 10259660 (+) |
| G56349 | NA | non-coding | upstream | 155030 | 10052050 ~ 10135429 (+) |
| G56456 | NA | non-coding | upstream | 231927 | 10058274 ~ 10058532 (+) |
| G56393 | NA | non-coding | downstream | 10923 | 10303482 ~ 10304485 (+) |
| G56564 | NA | non-coding | downstream | 60370 | 10352929 ~ 10353684 (+) |
| G56579 | NA | non-coding | downstream | 219854 | 10512413 ~ 10512640 (+) |
| G56567 | NA | non-coding | downstream | 226257 | 10518816 ~ 10533725 (+) |
| G56548 | NA | non-coding | downstream | 338539 | 10631098 ~ 10638452 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | upstream | 433872 | 9853929 ~ 9856587 (+) |
| G56100 | NA | other | upstream | 1160173 | 9129300 ~ 9130286 (+) |
| G53651 | NA | other | upstream | 4042067 | 6245564 ~ 6248392 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | upstream | 4357658 | 5931718 ~ 5943899 (+) |
| G53388 | NA | other | upstream | 4751405 | 5522242 ~ 5540638 (+) |
| CI01000009_11761868_11765848 | ORMDL1.S, ORMDL1 | other | downstream | 1468227 | 11761606 ~ 11766944 (+) |
| G57811 | NA | other | downstream | 1641383 | 11933942 ~ 11935251 (+) |
| CI01000009_12432736_12435509 | NA | other | downstream | 2139999 | 12432538 ~ 12436017 (+) |
| G57682 | NA | other | downstream | 2532910 | 12825469 ~ 12892339 (+) |
| G57691 | NA | other | downstream | 2613885 | 12906444 ~ 12918465 (+) |
