Gene
RNA
| Item | Value |
|---|---|
| gene id | G56564 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 10352929 ~ 10353684 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU64423 | True | 756 | lncRNA | 0.48 | 1 | 10352929 | 10353684 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_10341830_10347798 | CYP27A1.2, CYP27A1.4, CYP27A7 | coding | upstream | 4924 | 10341830 ~ 10348005 (+) |
| CI01000009_10338738_10339712 | BCS1L | coding | upstream | 13155 | 10338738 ~ 10339774 (+) |
| CI01000009_10319216_10329706 | PLCD4B | coding | upstream | 23093 | 10319216 ~ 10329836 (+) |
| CI01000009_10268535_10269640 | NA | coding | upstream | 83145 | 10268535 ~ 10269784 (+) |
| CI01000009_10103558_10119209 | GDAP2 | coding | upstream | 233709 | 10103558 ~ 10119220 (+) |
| CI01000009_10361969_10374788 | MCM3AP | coding | downstream | 8285 | 10361969 ~ 10375458 (+) |
| CI01000009_10376105_10382009 | LSS | coding | downstream | 22421 | 10376105 ~ 10382284 (+) |
| CI01000009_10382813_10390177 | LMLN | coding | downstream | 29129 | 10382813 ~ 10390827 (+) |
| CI01000009_10395109_10411388 | OSBPL11 | coding | downstream | 41201 | 10394885 ~ 10411621 (+) |
| CI01000009_10427119_10442186 | SNX4 | coding | downstream | 73435 | 10427119 ~ 10442251 (+) |
| G56393 | NA | non-coding | upstream | 48444 | 10303482 ~ 10304485 (+) |
| G56540 | NA | non-coding | upstream | 60370 | 10290459 ~ 10292559 (+) |
| G56509 | NA | non-coding | upstream | 63417 | 10288850 ~ 10289512 (+) |
| G56507 | NA | non-coding | upstream | 68405 | 10283073 ~ 10284524 (+) |
| G56392 | NA | non-coding | upstream | 93269 | 10258528 ~ 10259660 (+) |
| G56579 | NA | non-coding | downstream | 158729 | 10512413 ~ 10512640 (+) |
| G56567 | NA | non-coding | downstream | 165132 | 10518816 ~ 10533725 (+) |
| G56548 | NA | non-coding | downstream | 277414 | 10631098 ~ 10638452 (+) |
| G56594 | NA | non-coding | downstream | 342042 | 10695726 ~ 10696013 (+) |
| G56628 | NA | non-coding | downstream | 361926 | 10715610 ~ 10715888 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | upstream | 496342 | 9853929 ~ 9856587 (+) |
| G56100 | NA | other | upstream | 1222643 | 9129300 ~ 9130286 (+) |
| G53651 | NA | other | upstream | 4104537 | 6245564 ~ 6248392 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | upstream | 4420128 | 5931718 ~ 5943899 (+) |
| G53388 | NA | other | upstream | 4813875 | 5522242 ~ 5540638 (+) |
| CI01000009_11761868_11765848 | ORMDL1.S, ORMDL1 | other | downstream | 1407102 | 11761606 ~ 11766944 (+) |
| G57811 | NA | other | downstream | 1580258 | 11933942 ~ 11935251 (+) |
| CI01000009_12432736_12435509 | NA | other | downstream | 2078874 | 12432538 ~ 12436017 (+) |
| G57682 | NA | other | downstream | 2471785 | 12825469 ~ 12892339 (+) |
| G57691 | NA | other | downstream | 2552760 | 12906444 ~ 12918465 (+) |
