G56579


Basic Information

Item Value
gene id G56579
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10512413 ~ 10512640 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64438
CGAACTTACACATTTTTAGATTTTTTACCAAAATGTATTACTTTTCTGAACACTCCACAACATTAATGACATATTTAACTTCCAGAAAAACATTTTCCCATCTCAGGCATCAAATCCCTATTATTATTGGTCATTATTTTAAGTTATGGACACTATGGGAGCTCTCTGAATATTTTTATAAAATGTATTTGTGATAAAATCAACATTTTCCTATTAATCAGATGTCCC

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64438 True 228 lncRNA 0.29 1 10512413 10512640

Neighbor

gene id symbol gene type direction distance location
CI01000009_10491868_10508777 NA coding upstream 3404 10491401 ~ 10509009 (+)
CI01000009_10477699_10485965 NA coding upstream 25060 10476658 ~ 10487353 (+)
CI01000009_10454695_10474253 SLC12A8 coding upstream 38160 10454036 ~ 10474253 (+)
CI01000009_10445879_10449126 ZNF148 coding upstream 63163 10445879 ~ 10449250 (+)
CI01000009_10427119_10442186 SNX4 coding upstream 70162 10427119 ~ 10442251 (+)
CI01000009_10555555_10560050 NA coding downstream 41710 10554350 ~ 10560398 (+)
CI01000009_10583435_10617169 MAP2 coding downstream 70795 10583435 ~ 10617169 (+)
CI01000009_10644080_10691030 CPS1 coding downstream 131440 10644080 ~ 10692050 (+)
CI01000009_11342784_11347580 NA coding downstream 830144 11342784 ~ 11348827 (+)
CI01000009_11434018_11455253 NA coding downstream 921152 11433792 ~ 11455635 (+)
G56564 NA non-coding upstream 158729 10352929 ~ 10353684 (+)
G56393 NA non-coding upstream 207928 10303482 ~ 10304485 (+)
G56540 NA non-coding upstream 219854 10290459 ~ 10292559 (+)
G56509 NA non-coding upstream 222901 10288850 ~ 10289512 (+)
G56507 NA non-coding upstream 227889 10283073 ~ 10284524 (+)
G56567 NA non-coding downstream 6176 10518816 ~ 10533725 (+)
G56548 NA non-coding downstream 118458 10631098 ~ 10638452 (+)
G56594 NA non-coding downstream 183086 10695726 ~ 10696013 (+)
G56628 NA non-coding downstream 202970 10715610 ~ 10715888 (+)
G56633 NA non-coding downstream 209254 10721894 ~ 10722336 (+)
CI01000009_09853929_09854476 SAP18 other upstream 655826 9853929 ~ 9856587 (+)
G56100 NA other upstream 1382127 9129300 ~ 9130286 (+)
G53651 NA other upstream 4264021 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4579612 5931718 ~ 5943899 (+)
G53388 NA other upstream 4973359 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1248146 11761606 ~ 11766944 (+)
G57811 NA other downstream 1421302 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1919918 12432538 ~ 12436017 (+)
G57682 NA other downstream 2312829 12825469 ~ 12892339 (+)
G57691 NA other downstream 2393804 12906444 ~ 12918465 (+)

Expression


Co-expression Network