G56784


Basic Information

Item Value
gene id G56784
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10985244 ~ 11256970 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64663
ATTTAACGTCTAATGTTAAAATGTATGTGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
>TU64662
CCATTTTGGGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
>TU64650
TAGGTTGCCACCTGTGCAATAAATCCATTTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
>TU64652
TCTCCCCAGCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
>TU64660
CTTCAGGAAGCACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC
>TU64661
TTTTTTTTCTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64663 False 434 lncRNA 0.03 2 10985244 11256970
TU64662 False 415 lncRNA 0.02 2 11159996 11256970
TU64650 False 435 lncRNA 0.04 2 11211286 11256970
TU64652 False 415 lncRNA 0.03 2 11212925 11256970
TU64660 False 417 lncRNA 0.02 2 11222182 11256970
TU64661 True 415 lncRNA 0.01 2 11243813 11256970

Neighbor

gene id symbol gene type direction distance location
CI01000009_10644080_10691030 CPS1 coding upstream 293194 10644080 ~ 10692050 (+)
CI01000009_10583435_10617169 MAP2 coding upstream 368075 10583435 ~ 10617169 (+)
CI01000009_10555555_10560050 NA coding upstream 424846 10554350 ~ 10560398 (+)
CI01000009_10491868_10508777 NA coding upstream 476235 10491401 ~ 10509009 (+)
CI01000009_10477699_10485965 NA coding upstream 497891 10476658 ~ 10487353 (+)
CI01000009_11342784_11347580 NA coding downstream 85814 11342784 ~ 11348827 (+)
CI01000009_11434018_11455253 NA coding downstream 176822 11433792 ~ 11455635 (+)
CI01000009_11493236_11526914 VWC2L coding downstream 236266 11493236 ~ 11526914 (+)
CI01000009_11669960_11702667 HIBCH coding downstream 412990 11669960 ~ 11703539 (+)
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding downstream 454190 11711160 ~ 11714694 (+)
G56744 NA non-coding upstream 52485 10919860 ~ 10932759 (+)
G56725 NA non-coding upstream 58373 10886439 ~ 10926871 (+)
G56695 NA non-coding upstream 125090 10830992 ~ 10860154 (+)
G56633 NA non-coding upstream 262908 10721894 ~ 10722336 (+)
G56628 NA non-coding upstream 269356 10715610 ~ 10715888 (+)
G57556 NA non-coding downstream 113018 11369988 ~ 11370472 (+)
G57557 NA non-coding downstream 114425 11371395 ~ 11371768 (+)
G57564 NA non-coding downstream 129384 11386354 ~ 11386583 (+)
G57567 NA non-coding downstream 140033 11397003 ~ 11397339 (+)
G57589 NA non-coding downstream 174374 11431344 ~ 11431637 (+)
CI01000009_09853929_09854476 SAP18 other upstream 1128657 9853929 ~ 9856587 (+)
G56100 NA other upstream 1854958 9129300 ~ 9130286 (+)
G53651 NA other upstream 4736852 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5052443 5931718 ~ 5943899 (+)
G53388 NA other upstream 5446190 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 503816 11761606 ~ 11766944 (+)
G57811 NA other downstream 676972 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1175588 12432538 ~ 12436017 (+)
G57682 NA other downstream 1568499 12825469 ~ 12892339 (+)
G57691 NA other downstream 1649474 12906444 ~ 12918465 (+)

Expression


Co-expression Network