pabpn1 (pabpn1,LOC107596039)


Basic Information

Item Value
gene id pabpn1
gene name pabpn1,LOC107596039
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 29152052 ~ 29167913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30044
GAGATGCGAGAGAGACGGTGGGGGGGGGCGAGGGGAGGACACGGGCCGCCATTACCGCTGCCGTGGGAGCCTGTCTGCAGATTTTAAGGCGAAAAAAAATCCGAATTAAAGACAGAGCACGGAACTGGAGGCCATTAAAGCCcgagtgagagagatggaggaggaaGCGGAGAAACTGAAGGAGCTTCAGAACGAGGTGGAGAAACAGATGAACCTCAGTCCTCCGCCTGCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATGGAAGCAGACGGAAGATCCATTTACGTTGGAAATGTACGCAGAAGTATTTAGTTTACCATTCCAGATGTAAAATAATTGCTCAGTTAATTGGATTAGACTTGATTTATAACATATTGTTTACTGCAGTGACCCCTTACACC
>XM_022683906.1
GGCATTAGTGTTCTGGAAGACGCGGCGCAGCGAATAAAACACACGAGGCTTTCTGAACATGTTGATGTGAAATAAGAGGAATTgttttagtgttattttatattacgGGGGGGTTTAAACCGGTTTACGCAGCTGTTGCTCCTGCGCGTGAGGGAGGCTTACAAGAAAACGGTGTGAGATTTTTGAAGGCCTTTATTCCTCTTTAGCTAACCCCCTCcgttgtgtgagtgagtgtgtgtgtgagaggatttttttttgcccctCCTGCCCCACTATCTGCCCCCCCAAGGGGTGAGTCGGGCCCTTACCGCACAACCACGAGGCGAGGAGGAGTGGAGCAGCGGGAACCGGGCAGCATGGCTGAGTTTGGGAACGGGCTGGCGGATGAATCGCTGCTGGACTCGGACCCCGGGCATCCGGAGTTGGAAGACCCGGGCGTGGGCGATGAGGAGCCAGGGCTGGAGGAGGGAGAGGCCGCTATTGAAGACCCGGAACTGGAGGCCATTAAAGCCcgagtgagagagatggaggaggaaGCGGAGAAACTGAAGGAGCTTCAGAACGAGGTGGAGAAACAGATGAACCTCAGTCCTCCGCCTGCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATGGAAGCAGACGGAAGATCCATTTACGTTGGAAATGTGGATTATGGTGCAACAGCAGAAGAGTTGGAGGCTCACTTTCATGGCTGTGGTTCTGTCAATAGAGTCACTATCTTGTGTGACAAGTTCACAGGACACCCCAAAGGGTTTGCGTATATAGAGTTTGCAGACAAGGAGTCTGTTAGGACAGCCATGGCACTGGACGAGTCCTTATTCCGAGGCAGGCAGATAAAGGTTGGGGCCAAGAGAACAAATCGGCCCGGAATCAGCACCACAGACCGCGGGTTCCCACGGGCCCGCTTCCGCTCACGCGGGGGAAACTTCTCCTCATCTCGGGCTCGGTATTACAGCGGCTACACGCCCCCTAGAGGCAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGACCACCCCTCCCCTGGCCGCAGCACCCCCTTCTGTCTCGGCGgcgtctctatctctctctgctcCCGCCATACACACTCACCCCATCCTGTCCGTGTGGggtggtgggggaggggggcagGGTGACCACCGGCCCACTGCTGGTGGCATTTACTACAGTAACAAGCGCTGAAGCTTTAACACACgcccccctacacacacacatacaccagtacacacacacacaccacataggCTGACATGCATCAggccgacacacacacactatatgcaCACACATCCACCACATATTTATATAGTGAGAGCTAAGCCACGATAGCAGCAGCTGGTTACCTTGGCGAGGGAAGTGATCAAGGCAGGAGCAGAGAGGGGTTTATTAAAGGGGGGAAGAACAAAACATTTAGGGCCCAAATTGCCAGCGCACCGTGCAGCTCGGCACGATTCGAGGACTAATGCGCGGGGCCACAGGAATCTGCTGTTTAAAGAAGGAAGGGTGCAGAGCTTTTATTGGTCAGGAGGGGCAGGCAGGGCAGGGTGGAGGGTGGTGTTGGGAGATTTGTGTGgagagggatttttttttttttttccttttttatt

Function

symbol description
pabpn1 Predicted to enable RNA binding activity. Human ortholog(s) of this gene implicated in oculopharyngeal muscular dystrophy. Orthologous to human PABPN1 (poly(A) binding protein nuclear 1).

NR:

description
PREDICTED: polyadenylate-binding protein 2-B-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU30044 False 405 lncRNA 0.40 3 29153513 29157350
XM_022683906.1 True 1636 mRNA 0.55 8 29152052 29167913

Neighbor

gene id symbol gene type direction distance location
LOC103032104 zfhx2 coding upstream 3332 29126944 ~ 29148720 (+)
LOC103033137 jph1,LOC108426602,LOC106537243,LOC103139808 coding upstream 35097 29083329 ~ 29116955 (+)
rttn rttn coding upstream 350820 28707241 ~ 28801232 (+)
cbln2 cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967,LOC107589986 coding upstream 754064 28393999 ~ 28397988 (+)
cmbl cmbl coding upstream 1640301 27508139 ~ 27511751 (+)
stau2 stau2,LOC107560262,LOC107754214 coding downstream 18300 29186213 ~ 29329496 (+)
LOC103036222 NA coding downstream 197697 29365610 ~ 29370819 (+)
sbspon sbspon coding downstream 209181 29377094 ~ 29393606 (+)
trnav-aac_1 NA coding downstream 222627 29390540 ~ 29390612 (+)
trpa1 trpa1 coding downstream 449353 29617266 ~ 29667343 (+)
G22297 NA non-coding upstream 91170 29054889 ~ 29060882 (+)
G22279 NA non-coding upstream 156426 28992992 ~ 28995626 (+)
G22264 NA non-coding upstream 209605 28940558 ~ 28942447 (+)
G22198 socs6,LOC107741657,LOC107657790 non-coding upstream 452120 28689724 ~ 28699932 (+)
G22196 NA non-coding upstream 466976 28683605 ~ 28685076 (+)
LOC111195772 NA non-coding downstream 28556 29196469 ~ 29197658 (+)
G22424 NA non-coding downstream 399750 29567663 ~ 29568370 (+)
G22430 NA non-coding downstream 421133 29589046 ~ 29589270 (+)
G22445 NA non-coding downstream 694592 29862505 ~ 29864065 (+)
G22456 NA non-coding downstream 832202 30000115 ~ 30005494 (+)
G22276 NA other upstream 163221 28988568 ~ 28988831 (+)
LOC111192074 LOC108249465 other upstream 503864 28645061 ~ 28648188 (+)
mtrr mtrr other upstream 1577650 27520234 ~ 27574402 (+)
G22004 cct5,LOC107686714,LOC107727225,LOC107695377,LOC107549193 other upstream 1631866 27513606 ~ 27520186 (+)
sec61g NA other upstream 2985340 26163964 ~ 26166712 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other downstream 3095 29171008 ~ 29182131 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other downstream 1091395 30259308 ~ 30263850 (+)
LOC103026436 LOC108411506,LOC103368653 other downstream 1281451 30449364 ~ 30512826 (+)
G22834 NA other downstream 2326432 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 3654431 32822344 ~ 32826939 (+)

Expression


Co-expression Network