G22456


Basic Information

Item Value
gene id G22456
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30000115 ~ 30005494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30281
AAATAGGAAgtaaatacattctggtgttggtaggtgtttgaggaggttaaacaggttgaaaactctcgaaactttacaggcctgcttgatttaagcggtcctttgattaaaaattgaaatttcatatatacatatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacggaaatgctcaaaaactcttgaaaattgtcagattccataagatctaaaaacactttacaaatattgtgataattttttcatgtgtagctagcggactctatagcgccccctaattcattcgtttaataaattagctgtggatgtgtcacaatttgtctaatcttctcaaattttggtaggagcgTAGATACTATGactctgcacatatttgcaatggtttgtattagctccgcccaacaggaagtcggccattttgaaatatctgaattttgcatacattttttgcgtatgttgtcaaactactcctagaatTTTttttgaattctcttggtatttggtaaatataaacattgaacatatctgatgataaattgtgaagaaatagtcgatatcttaaacgaggaggGAATGGCGGACGGTTGAATGTTTGAGATGCCACATCAAAACTGGAGGTTGACACATAGGTAATGCTAGGAGTTTTGAGGACGTTATAAGAGAGAAAAGCTCACAAACTTTGACCGGCCTGCTTATCTGAGGCTGTTGTTTGAtctagaattagaatttcaaatatatgtgttttaacagctctatagcgccacctgtattttaaatgggtatttcacatttttggcaggatagaaaactcttgaaaattacCACACTTAATAAGACCTCAAAATTACTTTcaccggtttctcggtttggcccagtacgatttgcgctgttgtgcgagggccctacgtccccctgtgacagggggacaactcgttat
>TU30284
AAATAGGAAgtaaatacattctggtgttggtaggtgtttgaggaggttaaacaggttgaaaactctcgaaactttacaggcctgcttgatttaagcggtcctttgattaaaaattgaaatttcatatatacatatttcattggctctatagcgccacctaggtttcaatgcatatttgacattacggaaatgctcaaaaactcttgaaaattgtcagattccataagatctaaaaacactttacaaatattgtgataattttttcatgtgtagctagcggactctatagcgccccctaattcattcgtttaataaattagctgtggatgtgtcacaatttgtctaatcttctcaaattttggtaggagcgTAGATACTATGactctgcacatatttgcaatggtttgtattagctccgcccaacaggaagtcggccattttgaaatatctgaattttgcatacattttttgcgtatgttgtcaaactactcctagaatTTTttttgaattctcttggtatttggtaaatataaacattgaacatatctgatgataaattgtgaagaaatagtcgatatcttaaacgaggaggGAATGGCGGACGGTTGAATGTTTGAGATGCCACATCAAAACTGGAGGTTGACACATAGGTAATGCTAGGAGTTTTGAGGACGTTATAAGAGAGAAAAGCTCACAAACTTTGACCGGCCTGCTTATCTGAGGCTGTTGTTTGAtctagaattagaatttcaaatatatgtgttttaacagctctatagcgccacctgtattttaaatggatatttcacatgtttaacaggatagaaaactcttgaaaattggcacactcaataagacctcaaaattacttttaccggtttctcggtttggcccggtacgatttgcgctgttgtgcgagggccctacgtccccctgtgacagggggacaactcgttattattattattattattattattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30281 False 958 lncRNA 0.37 2 30000115 30001702
TU30284 True 983 lncRNA 0.36 2 30000115 30005494

Neighbor

gene id symbol gene type direction distance location
tram1 tram1,LOC107657822 coding upstream 18210 29968872 ~ 29981905 (+)
eya1 eya1 coding upstream 152183 29788445 ~ 29847932 (+)
msc msc coding upstream 313423 29682440 ~ 29686692 (+)
trpa1 trpa1 coding upstream 332772 29617266 ~ 29667343 (+)
sbspon sbspon coding upstream 606509 29377094 ~ 29393606 (+)
prdm14 prdm14,LOC107683184,LOC104959664 coding downstream 78883 30084377 ~ 30092744 (+)
ngdn NA coding downstream 119310 30124804 ~ 30129325 (+)
dcaf11 dcaf11,LOC107691410 coding downstream 126045 30131539 ~ 30143163 (+)
LOC103039153 LOC108426583 coding downstream 139652 30145146 ~ 30161827 (+)
LOC103043161 NA coding downstream 169326 30174820 ~ 30179807 (+)
G22445 NA non-coding upstream 136050 29862505 ~ 29864065 (+)
G22430 NA non-coding upstream 410845 29589046 ~ 29589270 (+)
G22424 NA non-coding upstream 431745 29567663 ~ 29568370 (+)
LOC111195772 NA non-coding upstream 802457 29196469 ~ 29197658 (+)
G22297 NA non-coding upstream 939233 29054889 ~ 29060882 (+)
G22556 NA non-coding downstream 258876 30264370 ~ 30264646 (+)
G22558 NA non-coding downstream 259531 30265025 ~ 30265290 (+)
G22576 NA non-coding downstream 298801 30304295 ~ 30304616 (+)
G22614 NA non-coding downstream 435011 30440505 ~ 30446957 (+)
LOC111195805 NA non-coding downstream 510701 30516195 ~ 30519886 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 817984 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 832202 29152052 ~ 29167913 (+)
G22276 NA other upstream 1011284 28988568 ~ 28988831 (+)
LOC111192074 LOC108249465 other upstream 1351927 28645061 ~ 28648188 (+)
mtrr mtrr other upstream 2425713 27520234 ~ 27574402 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other downstream 253814 30259308 ~ 30263850 (+)
LOC103026436 LOC108411506,LOC103368653 other downstream 443870 30449364 ~ 30512826 (+)
G22834 NA other downstream 1488851 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 2816850 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 2831558 32837052 ~ 32841346 (+)

Expression


Co-expression Network