G22743


Basic Information

Item Value
gene id G22743
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31090989 ~ 31097829 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30658
GTATTACTGGTGcatttttgtaagtttttgGCTCAAGGTTAAACTTCCTGTTACAGGCGATCAGACAAGCAGGAACAAAGGTaacgtgcgcacacacacacatatgcacactcTCTGCAGGTATGCTGTTGAGCATATTGAAGCTCAGCTCATTTAAcagGCACCATGACCCAGTCTACAGCTGAAAACTTTCTGAGAAAGAATAGGACCACTATTGTAAACGGTGTGACAAAAGAACAGTGTGACAGTTTGGTTGATTTTCTTCTTGAAAAAGGCCTTTTTATTGATGAATCTGGAAGTGAAATTCGCACCCTGAATACCAGTCAGAAGAAAATGCGCAAGCttctggaat
>TU30659
GGTGcatttttgtaagtttttgGCTCAAGGTTAAACTTCCTGTTACAGGCGATCAGACAAACAGGACCaaaggtaacacacacacacatatgcacactcTCTGCAGGTATGCTGTTGAGCATATTGAAGCTCAGCTCATTTAACAgGCACCATGACCCAGTCTACAGCTGAAAACTTTCTGAGAAAGAATAGGACCACTATTGTAAACGGTGTGACAAAAGAACAGTGTGACAGTTTGGTTGATTTTCTTCTTGAAAAAGGCCTTTTTATTGATGAATCTGGAAGTGAAATTCGCACCCTGAATACCAGTCAGAAGAAAATGCGCAAGCttctggaat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30658 True 352 lncRNA 0.44 2 31091939 31097829
TU30659 False 338 lncRNA 0.52 2 31090989 31097829

Neighbor

gene id symbol gene type direction distance location
LOC103029526 NA coding upstream 1531 31083505 ~ 31089458 (+)
LOC103029213 NA coding upstream 14932 31072147 ~ 31076057 (+)
LOC103026930 LOC103026930,LOC108411508,LOC105017614,LOC107714796,LOC107670243,LOC107565462,LOC107550532,LOC107676708 coding upstream 610649 30450102 ~ 30480340 (+)
ylpm1 ylpm1,LOC108411503,LOC107729078,LOC107685771 coding upstream 657699 30414115 ~ 30433290 (+)
LOC103040669 LOC108411512,LOC102303064,LOC101467994 coding upstream 697215 30375575 ~ 30393774 (+)
LOC103029852 NA coding downstream 1742 31099571 ~ 31103340 (+)
plb1 NA coding downstream 23566 31121395 ~ 31149177 (+)
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding downstream 52597 31150426 ~ 31162648 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding downstream 77612 31175441 ~ 31181114 (+)
rhag rhag,LOC107549521,LOC107695981 coding downstream 300583 31398412 ~ 31418117 (+)
G22641 NA non-coding upstream 450915 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 476127 30614537 ~ 30614862 (+)
G22636 NA non-coding upstream 504187 30586465 ~ 30586802 (+)
G22635 NA non-coding upstream 507529 30570427 ~ 30583460 (+)
G22626 NA non-coding upstream 555948 30534328 ~ 30535041 (+)
G22747 NA non-coding downstream 10826 31108655 ~ 31108949 (+)
G22754 bpnt1,LOC107549527 non-coding downstream 66554 31164383 ~ 31171802 (+)
G22822 slc30a1 non-coding downstream 297903 31395732 ~ 31480171 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 402186 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 409621 31507450 ~ 31507909 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 578163 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 827139 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1908858 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1923076 29152052 ~ 29167913 (+)
G22276 NA other upstream 2102158 28988568 ~ 28988831 (+)
G22834 NA other downstream 396516 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1724515 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1739223 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1978795 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1985813 33083642 ~ 33169392 (+)

Expression


Co-expression Network