G22754 (bpnt1,LOC107549527)


Basic Information

Item Value
gene id G22754
gene name bpnt1,LOC107549527
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31164383 ~ 31171802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30677
ATTCAAGTCAAAGTATCGTTTTTTCAAATTATTGTCTATGGTAATTAACTGTACAATACAGATACATCAGGCTAGAATTATAATGGTGAAATAATTctttaaccttttaaacttAAGCCTAGTGTTAAATATAACTCAGTTTCACTGTTTTCCATTAATGACTAAATAATAAACTCCATCACATTTAATAAATCCTAAGGATTAAGATTAAAGTAAGGAAAAACAAGAACTAAACAGTGACTTGCCTCCAACAGCATGCAGAATCGCCTCAGGTGCGCACGTGTCCCATTTTTTACATCCAGGACTGGCGAACACATAGGCAGAAGCTTTTCCCTCCACCAGCTGAATAATCTTGTTTCCAGCTCCTCCTACTCTGATCACATCATGAGGCTCCATGGCTTGAACAGTATCTATTACCAGTTTATTGCTGTGTGAGCGCGTGGTGGTGACGATCCGTTTCCCTTCTGGGACGTCCTGAAGCTGAAACCCAAAAGCACCCAAACCCAAGATTCCCCACAGAGTCCTGCCCAAAGTGGCATCTGCACCCATCTGGAAGGATCAGAAACAGGAGAGGAGGACACAACTCTATTCTCTATCACCGTACGGGTCGGAGCTCTGTGGACCTGGAGCTGCTTCTGAACGACAACTGGGCTGTCCATTAACCTTGCAGCTAcagcagagacagaaagacgGAGAAAAGGAAAGGAGGGGCACAGTGGAGAGTGGATCACCGCAGGAGAGAAGCAGTAGATGCTTTGAAGGCTAAAACAACATCAGAGGTGGTTCTCTTACCTTCAGTGTATTCTTTGGTGCCATCTAGAGGATCAACCCAAACAACAAGCTCCTCCTCCTTTAAGCTGCTGTACTCATCTGGACATTGCTTTTGTAATATAACATCATACTGGCCAGTCTCAATCAGGTCATCTTCTACTGCTTCAGATGGGAGATCCTCTTCCCCAATGATGGTGATTTTTGGGAAACTCTTTGACAGAGAAGCACATATACTCTTCTGAACAAGCCGGTCAGCCAGTGTCTGTAGGTCATTAGCTCCTGTCTTTTCAACAATTCCCAAATCTCCACTGTGGAGGACTCTCCTCACTATCTTTCCTGATTTCTCAGCCACGGTGTAGGCCGAGGCCAGCAACCTCATCACCACTGCTGGTCTGCTCGCCATCACTGAGAAGCCTGCTGTGATCCACACCAGCCTGAGAACTACAGCGGGGTAATTCACTCAGCCACACAGTCACACAGTCAGCGGCGGTTCCGGGAACGAGCTCCACAGGGCCGCG

Function

symbol description
bpnt1 Predicted to enable 3'(2'),5'-bisphosphate nucleotidase activity. Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Is expressed in intestinal bulb. Orthologous to human BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1).

NR:

description
3'(2'),5'-bisphosphate nucleotidase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30677 True 1289 lncRNA 0.46 8 31164383 31171802

Neighbor

gene id symbol gene type direction distance location
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding upstream 1735 31150426 ~ 31162648 (+)
plb1 NA coding upstream 15206 31121395 ~ 31149177 (+)
LOC103029852 NA coding upstream 61043 31099571 ~ 31103340 (+)
LOC103029526 NA coding upstream 74925 31083505 ~ 31089458 (+)
LOC103029213 NA coding upstream 88326 31072147 ~ 31076057 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding downstream 3639 31175441 ~ 31181114 (+)
rhag rhag,LOC107549521,LOC107695981 coding downstream 226610 31398412 ~ 31418117 (+)
LOC103025325 NA coding downstream 255777 31427579 ~ 31434213 (+)
dtl dtl coding downstream 426882 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 440711 31612513 ~ 31658213 (+)
G22747 NA non-coding upstream 55434 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 66554 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 524309 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 549521 30614537 ~ 30614862 (+)
G22636 NA non-coding upstream 577581 30586465 ~ 30586802 (+)
G22822 slc30a1 non-coding downstream 223930 31395732 ~ 31480171 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 328213 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 335648 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 375390 31547192 ~ 31547517 (+)
G22845 NA non-coding downstream 375948 31547750 ~ 31548100 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 651557 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 900533 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 1982252 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1996470 29152052 ~ 29167913 (+)
G22276 NA other upstream 2175552 28988568 ~ 28988831 (+)
G22834 NA other downstream 322543 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1650542 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1665250 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1904822 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1911840 33083642 ~ 33169392 (+)

Expression


Co-expression Network