G22822 (slc30a1)


Basic Information

Item Value
gene id G22822
gene name slc30a1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31395732 ~ 31480171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30773
agagagagagaaagagagatatcagCAGACAGGTCCATAGGTGCcttaaagtgtgtgtttgtgtatgtgtgtttgttatatacatacatatacacatacagtggTTTGCAACATTTTGGGCATCCCTGGTCAAATTaggtgtattatttttttttaagtgtatgtAAGTCACTTCTTCTACAGACACACTAATAAACTTAATTTACTGAATTTAACAgattgtattaaattaatttcttcTCATAAATAGAACTGTGCCCTAAAAAAAGTAGCATACATCAAATTCATGTTTGTTACTTGTAGAAGATTTGTTTCCTTATTTGCActtaaaaatgcaacaaaacttaATTTTAACAGGGTTGACCAAACGTTGGTTAGAGACTAAactctatatatatttcagagtatgtttgtgtgtgtatttgtgtgtgtgtgtgtttgtttgaacAGCAAAACAGCAAATAGCTTTCTCGTGTGAGCGAGAGTGCTTTCTTTGACCATTCAGGTCCATTCAAATACTTCGGTGATTTAAGGGTCCCTTTAACGATTGCACCATTTCTCCTCTTTTCCGTCTTTTCCTCTCTTATAAAGACGACTCCACCTCTCTGGCAATGATCACGTCCTGCTCGGCCCTGGGTGCTCCTTGATCTTTACCTTCCTGCTCCCTCACTGCATTCTCCAGCGACTCGTTGATGACTTCCAGCATGGCTGAGGTGGAGGCAACTGCGGCATTGCCCGCGGTAATGGCCTTCTGCCCAGCTGCGGGCATTTCGGCTGATTTGGGGCCGTCCCCGGAGCCGCAGCACTGTTTAGTTGCGCACTGTGTCCTGCAGGACAGCTCGCAGAGGGACGCACGCGACTCTGAGTTGACCGTGACAAACTCTGGCTGAATGGTGGTGGCGTGGATTCCCTCATCATGGAAGAAGGCTTTGATGCGCTTGGCCACATCCATGTAGGAGGCGGGATCGTGGCACTTGATGTGCGCTGTAGCGATGATGCGGCTGCCGGCCAACTGCCAAATGTGCAGTTCGTGAACAGCCAGGACTCCCTCCAGCTCTTGCAGCCTGGAATTCAGGCTGTGCATGTCAATCTGTTTGGGCACAGTCTGTAGCAGGATCAGTGCCGACTCCTTCAACAGTGGATACGTCGTGTACAGGAGGATGCAGACCATGATAACACACAGAGTGGGGTCCAGGTAAAGCACCCAACATGGTCCAGCTTTGGGTATAGAACTGTCTCCCAGGCTGCTATGGTTGCCATGTTCACCGTCCTGAATCCCCACCAGCGTGTGGTTGATGTGCTGGTGATCGGTGCAGTGGCTGTTGACGCAGGGGTTAATGCAGGGCACCCCGGGTTCGCAAGGCTGCCACACAAAGGTGAAGATGATGGCATTGATGACAACAATGACGGAGCCCAGAGCATCCCCAAGAACATGCAGAAAAACACCTCGCATGTTAAGTGAGGCCGTATCGTGGCTGTGGTCATGCTCCAGGGGGTCATAGGGAGCATTGCCGTTGATCTGGACATCC

Function

symbol description
slc30a1 Predicted to enable calcium channel inhibitor activity and zinc ion transmembrane transporter activity. Predicted to be involved in several processes, including cellular divalent inorganic cation homeostasis; inorganic cation transmembrane transport; and negative regulation of transport. Predicted to act upstream of or within in utero embryonic development. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and nuclear membrane.

NR:

description
PREDICTED: zinc transporter 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30773 True 1529 lncRNA 0.46 2 31395732 31480171

Neighbor

gene id symbol gene type direction distance location
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding upstream 214618 31175441 ~ 31181114 (+)
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding upstream 233084 31150426 ~ 31162648 (+)
plb1 NA coding upstream 246555 31121395 ~ 31149177 (+)
LOC103029852 NA coding upstream 292392 31099571 ~ 31103340 (+)
LOC103029526 NA coding upstream 306274 31083505 ~ 31089458 (+)
dtl dtl coding downstream 118513 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 132342 31612513 ~ 31658213 (+)
LOC103022697 NA coding downstream 184931 31665102 ~ 31691430 (+)
rnf8 rnf8 coding downstream 226883 31707054 ~ 31713807 (+)
tcte1 NA coding downstream 242834 31723005 ~ 31728361 (+)
G22754 bpnt1,LOC107549527 non-coding upstream 223930 31164383 ~ 31171802 (+)
G22747 NA non-coding upstream 286783 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 297903 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 755658 30638826 ~ 30640074 (+)
G22638 NA non-coding upstream 780870 30614537 ~ 30614862 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding downstream 19844 31500015 ~ 31505351 (+)
G22837 NA non-coding downstream 27279 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 67021 31547192 ~ 31547517 (+)
G22845 NA non-coding downstream 67579 31547750 ~ 31548100 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 309501 31789672 ~ 31792894 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 882906 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1131882 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2213601 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2227819 29152052 ~ 29167913 (+)
G22276 NA other upstream 2406901 28988568 ~ 28988831 (+)
G22834 NA other downstream 14174 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1342173 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1356881 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1596453 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1603471 33083642 ~ 33169392 (+)

Expression


Co-expression Network