G22835 (nek2,LOC107549520,LOC106571199,LOC107695968)


Basic Information

Item Value
gene id G22835
gene name nek2,LOC107549520,LOC106571199,LOC107695968
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31500015 ~ 31505351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30786
aaaaacagcaacagtagccttaaaacacaatacaggaaacatacacaaaaatatatacacagagaTATACACAATACAAGCAGCTGGTCAGCTGTTGTCTCTGTTCAGGGGGTCTAACGGCCTCCGTTTCACTTCCATACCTATAGCATCAGAACAGAGTGGATGTGGCGCCCTCTGCTGCTTCATTTGATTAATGGATTTCAACACACTCTCCGCTCTGGCAAGCTTCTCATTTGCCAGTCTCTCTCTGATGCACAGTTCCTGCTCCTTTTGCTCTAATCTCGCCTCCCGCTCTTTTAGAGCCTGCTCTCTCTCCCGTAGCGCCTGCTCCTTCAGCCGCTGCTCAGCAGAAACAGGAGACTCCAGTGGTTTATTCTGCCCTGAGTCACCCGACTTCCGCCGCTGCCTCACTTCTGCCTTCCGCTGCTCTGCTGCCACAAAGGAGGAGATTAAACTGCTCTGCAGAATGGACTCGACGGAGGGACGCAGATAGTCCTTTAAATGAAGCATTCTGGACAGAAGGGTGTTGAGCTCCTCTGAGAATCGATACGGGATCCTTCTAAACTTTCCCTCTTTAATTTTTTCTGCCAGATCCCTTTGATTATGTGCTGTGAATGGGGGGACAAAGCACAAAGCTCGTACAGCAAACAACCTAAAGACCAGATGTCAGACTTCTCATTGTAGGACATGCGATTCATTTGTTCAGGAGACATGTAATATGGAGTTCCCACAAAGGTTTTAGCAAAGCTTGTTTCATGTTTAAGAATTCTTGCCAAGCCAAAATCACCAAGTTTTATGTTCTGCTTTGCATCAAGGAAGATGTTTGCAGGTTTGAGGTCACGGTGCAGAACTGTGCTGCCTCCGTTACTCCTGCTGTGACATTCCTTCAGCGCTAGAGCCAGCTGAGCCATCATACGCAAGATAAACTCCTCCTCGAGGTATCTCGGTCTTTAATGCACTTGGAGATGAGACTGGCCAGGTCTCCCCCCTCGCAGTACTCCATCACTATGTAGAGTGTGGTGTTTGTGCGGTCTATAATGCGATCATAGTATCTGACTATGTTGGGATGTTTTAGCTCCCGCAGCAGATTCACCTCAGACACAAGCATCTGCTTCTCCGCTTCTGCCATGGTGCCGTAATCCAACTCCTTCCACACCAGAATCTTTCCGTCTGATTTTCTCCTGATCTTCTGGCACTTTCCATAAGAGCCGGAGCCGATAGTGCTGAGCACCTCATACTGGTCTGTGTGAGAGGGCATTATACCTGTAATAAACCCTTCTCTTTCATAGAAACTCACAGCTCCGAACACAGTAATGGCGGATAACACACCGCCGCTGCTTCAGTCTGTTTATATCAGCGTGCTACAACAACCGTTTA
>TU30787
aaaaacagcaacagtagccttaaaacacaatacaggaaacatacacaaaaatatatacacagagaTATACACAATACAAGCAGCTGGTCAGCTGTTGTCTCTGTTCAGGGGGTCTAACGGCCTCCGTTTCACTTCCATACCTATAGCATCAGAACAGAGTGGATGTGGCGCCCTCTGCTGCTTCATTTGATTAATGGATTTCAACACACTCTCCGCTCTGGCAAGCTTCTCATTTGCCAGTCTCTCTCTGATGCACAGTTCCTGCTCCTTTTGCTCTAATCTCGCCTCCCGCTCTTTTAGAGCCTGCTCTCTCTCCCGTAGCGCCTGCTCCTTCAGCCGCTGCTCAGCAGAAACAGGAGACTCCAGTGGTTTATTCTGCCCTGAGTCACCCGACTTCCGCCGCTGCCTCACTTCTGCCTTCCGCTGCTCTGCTGCCACAAAGGAGGAGATTAAACTGCTCTGCAGAATGGACTCGACGGAGGGACGCAGATAGTCCTTAAATGAAGCATTCTGGACAGAAGGGTGTTGAGCTCCTCTGAGAATCGATACGGGATCCTTCTAAACTTTCCCTCTTTAATTTTTTCTGCCAGATCCCTTTGATTATGTGCTGTGAATGGGGGGACAAAGCACAAAGCTCGTACAGCAAACAACCTAAAGACCAGATGTCAGACTTCTCATTGTAGGACATGCGATTCATTTGTTCAGGAGACATGTAATATGGAGTTCCCACAAAGGTTTTAGCAAAGCTTGTTTCATGTTTAAGAATTCTTGCCAAGCCAAAATCACCAAGTTTTATGTTCTGCTTTGCATCAAGGAAGATGTTTGCAGGTTTGAGGTCACGGTGCAGAACTGTGCTGCCTCCGTTACTCCTGCTGTGACATTCCTTCAGCGCTAGAGCCAGCTGAGCCATCATACGCAAGATAAACTCCTCCTCGAGGTATCTCCTCAGACACAAGCATCTGCTTCTCCGCTTCTGCCATGGTGCCGTAATCCAACTCCTTCCACACCAGAATCTTTCCGTCTGATTTTCTCCTGATCTTCTGGCACTTTCCATAAGAGCCGGAGCCGATAGTGCTGAGCACCTCATACTGGTCTGTGTGAGAGGGCATTATACCTGTAATAAACCCTTCTCTTTCATAGAAACTCACAGCTCCGAACACAGTAATGGCGGATAACACACCGCCGCTGCTTCAGTCTGTTTATATCAGCGTGCTACAACAACCGTTTA

Function

symbol description
nek2 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within retinal rod cell development. Predicted to be active in centrosome; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in retinitis pigmentosa 67. Orthologous to human NEK2 (NIMA related kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase Nek2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30786 True 1377 lncRNA 0.39 8 31500015 31505351
TU30787 False 1228 lncRNA 0.43 8 31500015 31505351

Neighbor

gene id symbol gene type direction distance location
LOC103025325 NA coding upstream 65802 31427579 ~ 31434213 (+)
rhag rhag,LOC107549521,LOC107695981 coding upstream 81898 31398412 ~ 31418117 (+)
c3h12orf57 grcc10,clg18h12orf57,cssa15h12orf57,c25h12orf57,c7h12orf57,LOC103027128,LOC107695984,LOC105901913 coding upstream 318901 31175441 ~ 31181114 (+)
LOC103028275 ppp1cb,LOC107583611,LOC108426284,LOC107582864 coding upstream 337367 31150426 ~ 31162648 (+)
plb1 NA coding upstream 350838 31121395 ~ 31149177 (+)
dtl dtl coding downstream 93333 31598684 ~ 31608806 (+)
ppp2r5a ppp2r5a coding downstream 107162 31612513 ~ 31658213 (+)
LOC103022697 NA coding downstream 159751 31665102 ~ 31691430 (+)
rnf8 rnf8 coding downstream 201703 31707054 ~ 31713807 (+)
tcte1 NA coding downstream 217654 31723005 ~ 31728361 (+)
G22822 slc30a1 non-coding upstream 19844 31395732 ~ 31480171 (+)
G22754 bpnt1,LOC107549527 non-coding upstream 328213 31164383 ~ 31171802 (+)
G22747 NA non-coding upstream 391066 31108655 ~ 31108949 (+)
G22743 NA non-coding upstream 402186 31090989 ~ 31097829 (+)
G22641 NA non-coding upstream 859941 30638826 ~ 30640074 (+)
G22837 NA non-coding downstream 2099 31507450 ~ 31507909 (+)
G22844 NA non-coding downstream 41841 31547192 ~ 31547517 (+)
G22845 NA non-coding downstream 42399 31547750 ~ 31548100 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding downstream 284321 31789672 ~ 31792894 (+)
G23022 NA non-coding downstream 851286 32356637 ~ 32357253 (+)
G22834 NA other upstream 5117 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 987189 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1236165 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2317884 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2332102 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1316993 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1331701 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1571273 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1578291 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 2082178 33587529 ~ 33595711 (+)

Expression


Co-expression Network