G22937 (hsp90ab1,LOC106942468,LOC102219317)


Basic Information

Item Value
gene id G22937
gene name hsp90ab1,LOC106942468,LOC102219317
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 31789672 ~ 31792894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU30913
TTCATGAAACAAAGTAGTTTGCAAAAATGACTTTACATAATTATGAAGTACTCCAAAATATTTGTCATTGTATTTCATTACATAATTTCTTAGTACCTCATAGCCTGGCATATCTTTAAGAGCCACTGaatcctaaaccatattttttaattaatagctgCAATgcgttcctttgaagtaatgaaacataccagtcctgcttaaaattatCAACCTTTtctaaccttaaaaaaaaaaaatcatggggTTTAATGCCCCTTTAAGGCCTTTACATATGTCTTATGACCAAATGGGTATGAATTTTTGTAAATCAATCATAGACACAGGACTGACAGATCTGCCATCCCTCCAGCTGCGCCATGAAGCCCAATCTCATGTGAATACAGAGCAAGTTTTGTCAAACCTGTACAGTGGTTGATTAACCCAAAGATGAGGCTCAAAATTCAATGCCACTACTTGGAACTCAGCTTCAGGAAGCCAGTTATTTTCCCAATGTAACTGCCCCCAATATATGTGCAAACTTTTTAAGTTgacttattatatatttattgtgtgtgagaggaaaaactttaattcttGCAACACCAAAGATGTCTTGGACACTGAAAGCACTCTGGAATTCTAACCCTAGGCAAAGTAGTAAAGAATTATACATTAGTTTATCATTTAAAATTCTAAGTTATCCTTGACATCTTGTACTTTCCAAGCCACAGTTAGTTTAGCTCACCCACCCCGATTTCCCAGCTCTCATAAGTGAAAACAGGATCCTTCAACATCAGTGGTACATCTTTTAATTTCTGCAAAAACAAGACACTGAACACACAAGCCTGGACACAGGCAAATGAAATTTTGCAGTCCACCCTGCAATGTGGTGTGCACATTTTACATGAGCAGCAGAGTCAAACGCTCCTACCCCCCAAAAACATCTCAACCAGTTGGAATGTTCCATTCCCCCTTTACACCCCAGTCCCTCACTTCAGAAAGCTCAGTGCAGCAGGGTACTTGAAGTCACAGGTGGACAAAACCAGGTTGCCCACATTTACATACAACTTGTACAACAAAGGAAAACAAGGCAAAAAGTCTTAAACTCGGGTCCATCTGAGGAGGACTTTAACCATTATGGGTTCTGGACAGTTTGCCCTTATATAGGGCAAAAGGTAAATAGCATTACAAAAGTGAGGCTAAAAGGTGTCAGAGGCAGGGTTTAGTCCACTTCCTCCATGCGAGACGCATCGTCATCACCCTCCAGTGGTGGGATCTCCTCTGGTGCAGGGGCAGATGTTGGTTCTTCTGAGGGGATGTCATCGTCATCGATACCTAAGAAAGGAGTGGGCAAAACAGTTAGCCATAATGAGTACTGGGGACAGGAACACCAGCTTGCTGACAACAAACGCTACATAATTTTAAAGACCTCGTTAGAACACAATTAAATCCCTTACCCAGACCCAGTTTGATCATCCTGTAGATGCGGTTTGAGTGCGTCTGAGGATCATCCAGAGAAAAGCCTGAGGAAAGCAGTGCGGTCTCAAACAGCAGGATCACCAGATCCTTCACTGCTTTGTCGTTTTTGTCAGCTTCAGCCTTCTGCCTCAGTGTTTCCATGATTGGGTGGTCAGGGTTGATCTCAAGGTGCTTCTTGGCCATCATATAGCCCATGGTGGAGTTGTCCCTCAGGGCCTGGGCCTTCATGATCCTCTCCATGTTAGCTGTCCAGCCATATGTGCTGGTTACAATGCAGCAGGGTGAGGACACCAGTCTGTTGGATACAGTTACCTGAAAGAAAGACACATGAGAAAAAGTTACATATAAAACAGAGTTTAGGACAGTAAGCAGTGAGTGTGTTAAGATTACCACCAAGGACCGAGCAAAACATTTAGATGCCTTTCCTCACTCAAACAGTAAAATCAGAAACCAAGCatgttaataaaaacacaatgtccATCGTACAAGCAAGCAGTTACAGACTCTCCATTCCTGACAAACCACACCAATACTTAATACTATTTGGACTCACCAATAAAACTGCTAATACATAAATTAGGaaacctgtttttattttaaaaaaaaaagaatggtaGCAGAAAAGGTGTCAATACGaaccaaattaataaaaagaaaaaaaactaagttaCTTAAAAGATCTCAATTTACCTTTTCAACTTTCTTATCCAGAATTTCCTTCATCAGCTTGCAGAGATTTTCAAACTTTGCCTTGTCATCCTCCatcttctttttctcctcctcatcctcaggCAGCTCCAGGCCCTCTTTGGTGACAGACACAAGTGTCTTGCCATCAAATTCCTTCAGCTGCTGGACACAGTACTCATCGATGGGCTCGGTCATGTACAGCACCTCAAAGCCACGCTTGCGCACACGCTCCACAAAAGCAGAGTTGGCCACCTGGTCCTTGCTCTCACCTGTGATGTAGTAGATGGACTTCTGATTCTCCTTCATGCGGCTGAGGTACTCTGACAGGGATGTCATCTCATCTCCTGACTGAGAGCTGTGGTAACGCAGCAGCTCAGACAACTTCTTACGGTTCTGAGAGTCCTCATGGATGCCCAgTTGATGTTCTTGGAGAAAGATTCATAAAACTTCTTGTAGTTGTCCTTATCCTCAGCCAGCTCAGCAAACAGCTCCAGGCACTTCTTGACAATGTTCTTGCGGATCACCTTCAGAATCTTGCTCTGCTGCAGCATTTCTCTGGAGATGTTCAGGGGAAGGTCTTCAGAGTCCACCACACCACGGATGAAGTCTGAGAAGAGTTGACAACTTAGTAAAAACATACCCAGATCTAAAACTAATGCACA

Function

symbol description
hsp90ab1 Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within blood vessel development and leukocyte migration. Predicted to be located in dynein axonemal particle; extracellular region; and nucleus. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in cytosol; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye and head. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to several human genes including HSP90AB1 (heat shock protein 90 alpha family class B member 1).

NR:

description
PREDICTED: heat shock protein HSP 90-beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30913 True 2813 lncRNA 0.42 3 31789672 31792894

Neighbor

gene id symbol gene type direction distance location
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding upstream 7453 31767544 ~ 31782219 (+)
nfkbie NA coding upstream 30162 31750167 ~ 31759510 (+)
tcte1 NA coding upstream 61311 31723005 ~ 31728361 (+)
rnf8 rnf8 coding upstream 75865 31707054 ~ 31713807 (+)
LOC103022697 NA coding upstream 98242 31665102 ~ 31691430 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding downstream 10530 31803424 ~ 31816114 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding downstream 31337 31824231 ~ 31830164 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding downstream 798976 32591870 ~ 32691661 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding downstream 1061188 32854082 ~ 32890441 (+)
kif13b kif13b coding downstream 1138716 32931610 ~ 32970019 (+)
G22845 NA non-coding upstream 241572 31547750 ~ 31548100 (+)
G22844 NA non-coding upstream 242155 31547192 ~ 31547517 (+)
G22837 NA non-coding upstream 281763 31507450 ~ 31507909 (+)
G22835 nek2,LOC107549520,LOC106571199,LOC107695968 non-coding upstream 284321 31500015 ~ 31505351 (+)
G22822 slc30a1 non-coding upstream 309501 31395732 ~ 31480171 (+)
G23022 NA non-coding downstream 563743 32356637 ~ 32357253 (+)
G23053 NA non-coding downstream 699361 32492255 ~ 32492741 (+)
G23057 NA non-coding downstream 729120 32522014 ~ 32527724 (+)
G23062 NA non-coding downstream 732168 32525062 ~ 32547464 (+)
G23075 NA non-coding downstream 918978 32711872 ~ 32716445 (+)
G22834 NA other upstream 294774 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 1276846 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 1525822 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 2607541 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 2621759 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 1029450 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 1044158 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 1283730 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1290748 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 1794635 33587529 ~ 33595711 (+)

Expression


Co-expression Network