G23075


Basic Information

Item Value
gene id G23075
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 32711872 ~ 32716445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31086
tGTTATTGCTTTACAGTAAAATGCATTGGTTGGATATGTCCATTATAGCAAGACAATACATTCAAATATAAGTTATACAGATGTCAGTTATGGTTTCATAGTACCTaactttacattaaatatatatgtacatataccttttaatcatatttgtatttatagacATAAATCCCACATCAGATTGAGCTCACAGTGCATAGGGTCACTTTCATTCAGAATGAACTAAATACACTCCTGCTGCATTTCCTAGTCATTAAATctgttgtgtgtatgtgcgctTAGATTGTACACATTTTCATACAATCTGTACGATACAGTTACAACAAGTAAGCCTTCTCAATTTCTACCCTTTGAAAAGTGATTATTAACAAATATGCAGTTAAGGTCCAGTGAGACACTGGcatgtgggggtgtgtgtgtgtgcattttggATGAAACAGTAGAAGACGACAGCAATGCTGTTCCTCTCAGATGGGGACCAGCCAAAAGGGGGCGTGGCCACAGCACAGACCCCACCCATACACACCAAAAAACAAACTCCAAGAGGATCCTCAGCCTCTGCGAAAATCAAACGAGGTTCTCCACTTgctgttaaatgttaaaatgtatgtGCAGAAAAGCTtttctggaaaataaaatagagCTGAGAATTCAGCTAATTAATGTCAGTAAAGTTTAGAAAATGGCACTAGAGAAGAGTTTCTCTCCATGAAATCAGATCCCACACATGACagcactcaaacataaactacACAATGTAGAGCTTAGTGCGGAGGCAAGAAGAATCCATCGTTTGTcaggaaagaagagagagagagagagaggagaggacatATTACAATGGTGCGCACGACTTATGGGCAGGTCGTCCAGTGTGTGGTCACTTCCTCCCCGTCACAGTAGCAGCTTCAGGAcaccaaaatgaaaataaagtcTCAGAATAAACTGCACCACAACCCGTACAGTTTCAAATACTGTTCTCCATCAGAGGAGCAGAAGGTGGTACACACAGGTCCGGATCCATCTCCAACGCTCAGATAAGGACGGTGGAAAATAATGCCCTGGGGAAGACCTGCATAGTGCCCCCATTCAGAGCTTTCTGTCCCGTTTCTCACTGCTGGGGGATATTTCACAAAGCAGCACTTATCAGTTAGTCAGACAGCTTAGTTAGCCCAGTTTCAGATAGCCCTATTTTAAGACTGAAACCTAACCTGCACAAGGTCTTATCTTATTTAGCCAGATAACttaaattcagttcaatttaGTTTAGTTACTTTCTGACTCAATTCTAAAGTCCAAATTTCCACATTTTCAGACAGTTTGGTGAGCTAGACAAATGAGTTACCGAAATACAAGTTATCAAACTATACAAAGCTTCAGTAAGATaaatagaaaacatatttaGCTTGATAACTCAAATTCAATACAGTTTATTTAGTGTCTCTGCTTAAAAAATCCAGATCAAgaccagctggtcatccagaaaaaacattatttgcTGGTTGGCTCTGGATTTTTCTATGCAGGGTTCTCACTCAGATAACGCAATTCTTTCTTCTAGTTAACTTGCATGTTGTTGACTTGCCAAAATGACATTatattcagcaaaattaaaatAGCTGGGCCACACAGCCAGCCAAACATTTGAAATTCAAGCCATTTCTCAGCTAGATCTCAGTTCACACAACCAGATATCTTAGAATTTCTGAGTTTAAGTATAATTATCCAGTTTCTTTTAGCTACACCAAACAATTTGCCAGACAGCCCTCTATTCAGTCTAAAccactgttttatttaaccagaaatcacagttaatcagaTAAGCCTCTAGGTTTTCCTTATTGGACAACCCTCGCTCTGGGCTTAAGTAGTCTGAGTAACAGAGAGATCCTGCATTCTGCAATACCCCCAATCCTCATAGCAAAAGAAATTCAGGTTTGTCCTTTGAAGAGATGTAGTAAGGAACCAAAAGTGATGTTCATATTGAGATTGCATATAGTAGCATTACCTCTTGGCAATACTGACTTGAAAACACACCCATTTCTCCAAAACTGCACATAAATCCGTTGTCCTTGGGAGCCACCAGAGTCTCTGCTTGTTTTTGCATGGTGTGGAAAACATCTCAACCGCCGTTTCTGCTCATAGCTGCCAGGTAGCGATAGGGCCATGGTCACCGCAGAAACATCCCATCACGCCCTGCGGATAGGACACGCTCTCAGGGGCTTGTGCTCACAAAGTCTTTGCAGTGAAAGGGACTTTTTTCACaacaatcacacacatacacacacacaacctagcAGAAGGAAGCACTAGTTGATGCTGAATGTAGAGGACTGCTTGCTTGCTTTGTTTTAAAGTGCATGTATCTACATGTAAAACTCTCAACAGAACACTCATTATCTACCACTAACAGGCATTAAAAACCCATAATATTCCCTGATACAGAACAGCTGTGATCAAGACCCTCCTTCTGCTGACGGACGAAGTGAGGGACACACCCTCTTATGCAGGGGAGGGGGCAGGGGAGGGTCCAACACTTTCTTCTCTTCCTtctcagaaaaataaaagtgttcttAATGAGGTTAATTAGAGCAATTCTTCATCACATAGACCTCagcaaataaatccataaaTTCTTCAAGCAGCAAACTGCTTATGTTGTGCAACTTCTGGAGATGACCCATTTCCCACTGTCCCAATTCTGAACTAAGGATACATTAACAGCAGTCTGCTCCAACCGGCCAAAAAGCAtccctttaaaaaaagagacaattttaCCTAGAGGTATGACACAAGGACATGACCTGAAAGTGCAACTTCTACAGCCAAACATCTGTTTGCCATTGTCATGTTTCAAAAATGTTCAaccacaaaaaagagagagtaagtaAGTGTTTGTGTTTACACAATGCAGTGCTGAAAAATAGTCAAATATGTACATCTGGTAAGGTCTCAAAAAAAGACCAATGagagaaaattgaaaaaatataaataaataaattactatataTCCAGTGCATATGGAAGGTTTCCAGGTTTCAATATTTCTACATttcatgttatgtttttttttttaatctacacacagattgttttttattttcctggTTAAAGCAATTTTGGCCTCTTTAACCACTGGAGTGCACCAGTGCACAGCCTCTTTCAGATATCCCCCTGCTTAGACACTGCTCAGTTTGTGTAAGTGGcctatgttgtttctaaattaccTCTGATTTAGAACAACTAAGGCTACCTTGATTTGGGCACTTTCAGTGCTGTAGACACTTTCCCCACAACTTTGCCCTGATACAGTAATTAATGGAAGAACATTGCAGCAGACCTAAATTGTAAGGGTCAATAACTAAGGGTCTTAATATTCATGTATTaagtactaattattaataCCCATGTATGTTTAAATACTTACAGATTTTGAAATCTTATGGAACCGTATGTCTTTTGTCACTGAAGAGTATTATGTGTAGATCAGGAGCTGAATAAAGTTTAGATAGCTCAAACAATGAAATGTGGACAACTTCTAAAAGGACCTGCAAACTTTCCAGATACACTTtgtgacaaaaaacaaaagcaaatgtacaaaaacagCAAGAAGCTCTTCAGGGTTCAGGTACATCAAAGTCAACACCAGTGGGACATGGTCCATATTTGGCAGACGAGTGATCCACTCTAGGACATGAGGGATATTGTCcttattttcttgtttcttttctttttttctttttgttttcagaGGGAAAAGAAGAGCTGCCGACACAAAGATCCTCTTCATGGATGAGGACAGGAAGGTTGGGACCAGGCTGTAGATTAAATCTTATTTCAGGACTTAATTTTAACTGTAAATATTGACAGGTACCTGGAGTTCATATATGATGGTAAAATTGGTGACTTTGATGACACCAACCGTTTGAAGCGTTTTATTGTAGAGATCTTTGCAAATAAACTTGAAGGGAAAAGACTCCATAAACTCCAGTGGGTTGGGGTGTAATCTGCTGTTGGTTACTGCAATATAAGGGCagttctatttgctcaagctgaAGGGAAGCCAACTTTGAGGTAATGGTGGTTTTGTACACTACAGTGGAAGAACAGTGGTCTTGCTTAGTTAAGGAATAGTTTTGTCAAAAAAGCTAATGTTTGTAATGAATGAAAGTGAACAGCCAGCAATTAGCACTAAGCAAGCAGATTAACACTAATTTGTGGCTACTACCTTTCATCCAGTCTTAGCCATGCTAGCATATTTGATTGCGCTATTCCTTTAAGGGTTTAGAATAGACGGTGGTATCTAGTGGTGTGTTCTGGACAGAGGGTTGAAGAACATTTATTATTGGAGATGCCTGGTGATGCATGGAGGTTTGGCAGCTGAATCTTCTAATGCTCCTGACACATAGGCAGGTTGACGAAGGTGAAGACGTTGTACTCGATCATGATGGAGAAGCAGAGGAAGATGGCATACAGGACCAGAACATACATGCCCAGTTTGAAGTCCAGCTTCCAATGATTGACATGGATGCCCAGGATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31086 True 4541 lncRNA 0.43 2 32711872 32716445

Neighbor

gene id symbol gene type direction distance location
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding upstream 20211 32591870 ~ 32691661 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding upstream 881708 31824231 ~ 31830164 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding upstream 895758 31803424 ~ 31816114 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding upstream 929653 31767544 ~ 31782219 (+)
nfkbie NA coding upstream 952362 31750167 ~ 31759510 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding downstream 137637 32854082 ~ 32890441 (+)
kif13b kif13b coding downstream 215165 32931610 ~ 32970019 (+)
filip1 filip1 coding downstream 299975 33016420 ~ 33067727 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding downstream 354366 33070811 ~ 33076140 (+)
naa20 naa20 coding downstream 715478 33431923 ~ 33436804 (+)
G23062 NA non-coding upstream 164408 32525062 ~ 32547464 (+)
G23057 NA non-coding upstream 184148 32522014 ~ 32527724 (+)
G23053 NA non-coding upstream 219131 32492255 ~ 32492741 (+)
G23022 NA non-coding upstream 354619 32356637 ~ 32357253 (+)
G22937 hsp90ab1,LOC106942468,LOC102219317 non-coding upstream 918978 31789672 ~ 31792894 (+)
G23116 NA non-coding downstream 177796 32894241 ~ 32894650 (+)
G23251 NA non-coding downstream 455924 33172369 ~ 33172714 (+)
G23253 NA non-coding downstream 473516 33189961 ~ 33190715 (+)
G23255 NA non-coding downstream 490867 33207312 ~ 33207532 (+)
G23282 NA non-coding downstream 629367 33345812 ~ 33346060 (+)
G22834 NA other upstream 1216974 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 2199046 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 2448022 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 3529741 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 3543959 29152052 ~ 29167913 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 105899 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 120607 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 360179 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 367197 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 871084 33587529 ~ 33595711 (+)

Expression


Co-expression Network