G23086 (cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458)


Basic Information

Item Value
gene id G23086
gene name cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 32822344 ~ 32826939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31098
AGAGTTCAGAAGAGCATCTCTAAGGACTTCCAAGGTCCTCTTGAGCAAGCTCAGACTGTGAGCATCTGCCACGCTCTGCAGGGTAAACAGCGGTAAAAATAAACTcagaaaaactacaaaaataagaaacaaggACATGTCTGGGGTTCAGACAGCTGGAGAGGCCCAGGTTAGCCCCCATCAGAGAGCTATTTGTAGGGAAACAATGCTACACTACTGCATActgctgatacagcagctcacggATCCTGTAGTAGTCTTCACACTGACAACCCTCCAGACCTATACGACCAGCCTCCGTCCTGCGAACGGCCACTAAGTTATTGCAGACCAAAACTCCGCCCACAAACTCTGCCTGGATGCCCTCCCGCAGCAGAACCTGCTTAAAGTCCGACAGTCTGGGTTCATTTATGAAAACAGCCTGGTGACCCGGAgtCTCAGTTGCAGGTAGGGGCTCCAGTGTGGGAATGACGTCACTCTCTTCTGAAATCTCCTTTTCGTCCTCTCCGAACAATGTCTTCATGGCCCGCTGTGTTGCCATGGCACTGGGCTCAGTCGCCAGCTCAGACGACACATCCATGGAGAGTTCTCCTTCCTCTGCCTCGTCCCGGGTGTCTCCTTCCTCCGCCAGCACCCCCGTGTCCACTTTCACCACCCGCATGTCCAGCACTCCATCGATCCAGGCCAGCTCTGTGTCCCTGGCCTTACAGAACTGCAAAGAGCTGACCAGAGAGTCTTTCAGT

Function

symbol description
cpsf2 Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; mRNA polyadenylation; and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA cleavage and mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF2 (cleavage and polyadenylation specific factor 2).

NR:

description
cleavage and polyadenylation specificity factor subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31098 True 743 TUCP 0.53 3 32822344 32826939

Neighbor

gene id symbol gene type direction distance location
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding upstream 130683 32591870 ~ 32691661 (+)
atp6v1d atp6v1d,LOC107568214,LOC106571673 coding upstream 992180 31824231 ~ 31830164 (+)
rbm25 rbm25,LOC107568207,LOC107704053,LOC107669447 coding upstream 1006230 31803424 ~ 31816114 (+)
slc35b2 slc35b2,LOC107559116,LOC107704052,LOC107568229 coding upstream 1040125 31767544 ~ 31782219 (+)
nfkbie NA coding upstream 1062834 31750167 ~ 31759510 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding downstream 27143 32854082 ~ 32890441 (+)
kif13b kif13b coding downstream 104671 32931610 ~ 32970019 (+)
filip1 filip1 coding downstream 189481 33016420 ~ 33067727 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding downstream 243872 33070811 ~ 33076140 (+)
naa20 naa20 coding downstream 604984 33431923 ~ 33436804 (+)
G23075 NA non-coding upstream 105899 32711872 ~ 32716445 (+)
G23062 NA non-coding upstream 274880 32525062 ~ 32547464 (+)
G23057 NA non-coding upstream 294620 32522014 ~ 32527724 (+)
G23053 NA non-coding upstream 329603 32492255 ~ 32492741 (+)
G23022 NA non-coding upstream 465091 32356637 ~ 32357253 (+)
G23116 NA non-coding downstream 67302 32894241 ~ 32894650 (+)
G23251 NA non-coding downstream 345430 33172369 ~ 33172714 (+)
G23253 NA non-coding downstream 363022 33189961 ~ 33190715 (+)
G23255 NA non-coding downstream 380373 33207312 ~ 33207532 (+)
G23282 NA non-coding downstream 518873 33345812 ~ 33346060 (+)
G22834 NA other upstream 1327446 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 2309518 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 2558494 30259308 ~ 30263850 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 3640213 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 3654431 29152052 ~ 29167913 (+)
LOC103042732 NA other downstream 10113 32837052 ~ 32841346 (+)
LOC103037425 LOC108426312 other downstream 249685 33076624 ~ 33081862 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 256703 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 760590 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 951003 33777942 ~ 33779903 (+)

Expression


Co-expression Network