LOC103037425 (LOC108426312)


Basic Information

Item Value
gene id LOC103037425
gene name LOC108426312
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33076624 ~ 33081862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31174
CTCTGCTCCTGTTTCTCTTCAGTGTCCTTGGCTCGTCAGATTCAGCAGCAGGAGGATGAAGGCGCATCTTATGGTGTTGCAGCAGGTGGCGCGGCGGACCCTCACCACCACCGCACAGAGGCAGGTGGAGAACCAGGTCCCACAGAAGCAAAAATTGTTCCAGGCAGATAATGGGCTGCCAGTTCACTTGAAGGGTGGAGCAAGTGATGCCGTCCTGTATCGAGCCACCATGGGCCTAACTGTTATGGGAACCTTATTTGTACTGTATGAGCTGGGAAAGGCAGCACTTCCTCAGAAGAAGGAATGATTCCAATCTCCTGGATTTCTTTCTTCTGGAGTTCCATGTCTAATGTGTATGGCATATAGGGATGTATTTTCATGGAGTGTATTTATTCTTTTCATAATGGGACCAGTCTACTTGTGTGTAGTGGTGAACAATAAAGTCTGCCTCCTTTGATGATCAGCCTTCTGAG
>XM_022684612.1
GGGGGCAGCAGCTCCGATGGTAAAGCTCAGCTCTGCTCCTGTTTCTCTTCAGTGTCCTTGGCTCGTCAGATTCAGCAGCAGGAGGATGAAGGCGCATCTTATGGTGTTGCAGCAGGTGGCGCGGCGGACCCTCACCACCACCGCACAGAGGCAGGTGGAGAACCAGGTCCCACAGAAGCAAAAATTGTTCCAGGCAGATAATGGGCTGCCAGTTCACTTGAAGGGTGGAGCAAGTGATGCCGTCCTGTATCGAGCCACCATGGGCCTAACTGTTATGGGAACCTTATTTGTACTGTATGAGCTGGGAAAGGCAGCACTTCCTCAGAAGAAGGAATGATTCCAATCTCCTGGATTTCTTTCTTCTGGAGTTCCATGTCTAATGTGTATGGCATATAGGGATGTATTTTCATGGAGTGTATTTATTCTTTTCATAATGGGACCAGTCTACTTGTGTGTAGTGGTGAACAATAAAGTCTGCCTCCTTTGATGA

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 7A2, mitochondrial

GO: NA

KEGG:

id description
K02270 COX7A; cytochrome c oxidase subunit 7a

RNA

RNA id representative length rna type GC content exon number start site end site
TU31174 False 473 TUCP 0.32 4 33076654 33081862
XM_022684612.1 True 490 mRNA 0.49 4 33076624 33081849

Neighbor

gene id symbol gene type direction distance location
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 484 33070811 ~ 33076140 (+)
filip1 filip1 coding upstream 8897 33016420 ~ 33067727 (+)
kif13b kif13b coding upstream 106605 32931610 ~ 32970019 (+)
extl3 extl3,LOC107745900,LOC107548434,LOC107704067,LOC107559127 coding upstream 186183 32854082 ~ 32890441 (+)
LOC103043556 LOC108426268,LOC108257619,LOC107548420,LOC107719437,LOC107669431,LOC107559097 coding upstream 384963 32591870 ~ 32691661 (+)
naa20 naa20 coding downstream 350061 33431923 ~ 33436804 (+)
cfap61 NA coding downstream 362540 33444402 ~ 33498321 (+)
insm1 NA coding downstream 426212 33508074 ~ 33511617 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding downstream 543624 33625486 ~ 33649657 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 594213 33676075 ~ 33681836 (+)
G23116 NA non-coding upstream 181974 32894241 ~ 32894650 (+)
G23075 NA non-coding upstream 360179 32711872 ~ 32716445 (+)
G23062 NA non-coding upstream 529160 32525062 ~ 32547464 (+)
G23057 NA non-coding upstream 548900 32522014 ~ 32527724 (+)
G23053 NA non-coding upstream 583883 32492255 ~ 32492741 (+)
G23251 NA non-coding downstream 90507 33172369 ~ 33172714 (+)
G23253 NA non-coding downstream 108099 33189961 ~ 33190715 (+)
G23255 NA non-coding downstream 125450 33207312 ~ 33207532 (+)
G23282 NA non-coding downstream 263950 33345812 ~ 33346060 (+)
G23286 NA non-coding downstream 271138 33353000 ~ 33353261 (+)
LOC103042732 NA other upstream 235278 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 249685 32822344 ~ 32826939 (+)
G22834 NA other upstream 1581726 31494345 ~ 31494898 (+)
LOC103026436 LOC108411506,LOC103368653 other upstream 2563798 30449364 ~ 30512826 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other upstream 2812774 30259308 ~ 30263850 (+)
LOC103036694 LOC108426313,LOC108257731 other downstream 1780 33083642 ~ 33169392 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 505667 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 696080 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 812474 33894336 ~ 33964508 (+)
trdn NA other downstream 2144936 35226798 ~ 35302347 (+)

Expression


Co-expression Network