G23349


Basic Information

Item Value
gene id G23349
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33568394 ~ 33568942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31448
TTCAGGTATGCAGCAAGGAGAAGCAGAGAcggtgtcacgtctggtgctgtaggcgctTCTGTTCCTTCCACTCTGAGCTCCAACGGAGGTTTGCAGTtagacaactacactacccagaacgcaccacacgctgacatcacacacacctactcacgtgacacctcacctgcttccgccAGGAAGCCCGGAGTACTGATTACCCCAGAGTATTTAAGGACACTTCACGAACACACACTGGTTTCTAccacatcacattacattaccttctctgtgattgtttttctgtgtatgaccttgcttttgttttttcgaCGCCGATTTCTGCCTGTacctctgattgtggatttactgtgtttgacctggactgtttaatgttcccgatttttggattatctctgatgctGGCTtcctcgtgtatgaactctggactgtttcccgtttatggtatggtttatTCTCTGAGGCTTCTCTTTACCGGTGCTCTACTTTGTTTTTGTATCACTACTCTTTATCTGCCTTGTATTTGAATAAACAACCCATTTTACTGTa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31448 True 549 lncRNA 0.38 1 33568394 33568942

Neighbor

gene id symbol gene type direction distance location
insm1 NA coding upstream 56777 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 70073 33444402 ~ 33498321 (+)
naa20 naa20 coding upstream 131590 33431923 ~ 33436804 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 492254 33070811 ~ 33076140 (+)
filip1 filip1 coding upstream 500667 33016420 ~ 33067727 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding downstream 56544 33625486 ~ 33649657 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 107133 33676075 ~ 33681836 (+)
ndufaf7 ndufaf7 coding downstream 220640 33789582 ~ 33798774 (+)
LOC103030910 LOC108444009 coding downstream 414252 33983194 ~ 34046385 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 482311 34051253 ~ 34069327 (+)
LOC111195982 NA non-coding upstream 66043 33501237 ~ 33502351 (+)
G23289 NA non-coding upstream 207795 33360380 ~ 33360599 (+)
G23286 NA non-coding upstream 215133 33353000 ~ 33353261 (+)
G23282 NA non-coding upstream 222334 33345812 ~ 33346060 (+)
G23255 NA non-coding upstream 360862 33207312 ~ 33207532 (+)
G23356 NA non-coding downstream 10325 33579267 ~ 33579522 (+)
G23367 nkx2-4 non-coding downstream 81695 33650637 ~ 33654989 (+)
G23427 NA non-coding downstream 316520 33885462 ~ 33887869 (+)
G23462 NA non-coding downstream 477648 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 678895 34247837 ~ 34286895 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 399002 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 486532 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 727048 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 741455 32822344 ~ 32826939 (+)
G22834 NA other upstream 2073496 31494345 ~ 31494898 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other downstream 18587 33587529 ~ 33595711 (+)
cebpzos cebpzos other downstream 209000 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 325394 33894336 ~ 33964508 (+)
trdn NA other downstream 1657856 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2474489 36043431 ~ 36096726 (+)

Expression


Co-expression Network