G23367 (nkx2-4)


Basic Information

Item Value
gene id G23367
gene name nkx2-4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33650637 ~ 33654989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31468
ATCAGTGTCTTCCAAATttcctttttactgtttacagtGATGTTCAATATTCTCCCAAAGTAGTTGAGTGTATATTCAAATCGTTGAACAAGTAACTCATTTTTGCGCGCGCGTTGACTTGGAGTTGCAGaaaataactattaaaatatGCGATCCTCGGATGTTCTAAATTGTTCATCTGTGTGACGCAGAACTCTTTGTATATTCTACAAAGCTGTGGCAGTTCCAGTTGTCACATaactctgttgttttgttgaaataatgcattttaaactgtatataaatcTCCAGTAAAACACCGATGAGGTTAAACTTACTGGTAGGGTACCGTGGCTCTGGGTTTGCTCCGTACCACGCCGTGGCTGCCGCTCCATTCCGCATGCTCTCCTGATAGGAGGGTAGCTCACCCACATTGCCGATGGTGCCGTTGCAGTATCCCCCCACCGCGGCGTGCGGGAACTGGGCCACTGCTGGTGCCATGTGGTAGGAGGAGGCCGCGGGACCGTGCTGTTGCTGCATGGCCGCCTGACACGCGTGCTGCGCCGGCCGGTACGCGCTCTCCATGCCGGCAAACTTCCTGAAGGTCTCCTCGATGGGGCTGAGAATGTCTGTGACCGAGAAAGGGGTCGAGTGTTTGGGGCTCAGGGACATGGTGCGCTTTTGCCCCCCCCAGTAGTCGGTGCGTGAGGAGCGCTCGGAACTGCAGGAGCGCCTTGGAGAGGGAGACGAGCTTGGACGCTCTTATCTCAGCTCCATTGGAGCCTCACGCATAACCGTGGGCTTTGCGACAAACAGGAGGCGGAGCTACGAGCATCATGCAAAGCCAACAATGACCAttcagttagtttttttttttttaaacatcagaaCTGAAGAACCAACGCATATTGCATATGGAGCAAGAACTATTCAGGATGTGTTTGGATATTGAAAAGTAGGATGATATCACCTTTACATAAATTGGAGCTACAGACAGTTTTGTAAAAACACCAATACATTAGTCACACAGTGTGTACATTGCAAACGCGGATGAAAAGAAAATAGCAGTAATAAACATCTTAAATTACAGATAATTTCAAATAAGAACGTATAAGTAAATGCAATTAATGACcgctttataaagtgtttttcaACTTTTATCCCTTTAGCTGTACTGTCTTGCCGCCAAATTGGCTTTTAACTGTTTAGGGTGGCGCTTCACCAGCAGACTACTTTCTTTAACTCCTGATGActtcatttaaatattaaagattttACTGCGGACTAATTATTAACAGAATCAAGTGTTCCTGGAATCCAATCTAGTAACTGCTAGGTTATGATCAATAGATTGTTCGTCTAGTCAGGGGATTGATGGAGAAGTGTATAGTTAAGACCACAAAACCATAGGAACAAAAggctgtaaatgtgtttttgtacaGCCGTAGAAGAATTCAATTAAGTTAAACAAAgttttttatcaatttattcGAACAATAGAGCACAGTGATTTTAAATCTCTTTAGCGAAACATGGTCGCTTACTTTAGTGTATTCACCCAGTGTTGATGTTATTAGCATCAGACGTTTAAACACGATTCATCATCACCGGTTGTTCAGGTTTTCCTCATGCTGATCTAGAAGCCTCTTAACTCTATGGAGCCTGAAGTCAGAGGGCATGGCCAGGCCACTACATTCAGCTGAGAATGGGCTGCGCATCAGTCTGCAAAGAGCAGCAGGACACTAGGAGAAACCCATGCACACCGAGGAGAAAACGAAACTGTGGGAAAAGTTTGGGAAAAAAATCTTGACCCGGCTGTATAGCTGTGTTGAACGCTGAGGtgtgtgtgtgcgcgcgcgcgcaGAGTGGCGCTACCTTCGTGTGATGGGGTGAAAGGTCCTGCCAGCCCACTTGAGCGACCCTTTTCTTCAGCGCCTGCCTTGCTTCCTCCCGCAATTAATGTGCTTTAAGGATGGAGATGATGCTAATGAAGGCGCCAGAAAACGAGGCGCAGCGAGAAACGACCAGGacatttttgaagttttgaagATATCGaatttaatggactgttttaaagGAATAGACCAGCCTTTAACTGAAGGCCTGAATAGCAAATAACGTCGCAGACACAGTTTAGGCCTTACTTTGTGCTTTCAGCGTATCGGTGTTGTAGAGGTAAGATTGTAACCATTCATTTAAAAGCATATCTCTAAGGCACAGTGCTGacactttaaaattaatttaatttaactttatttaatttaaaactggTTTAATTAAGCATATTTAGGGTTAGattactagaaaaaaaaaacagatttaaagacTAGTATAAATATAGCTGGTAATTATGAGTAGATTTAAATAGAAACCGAATCTAGGCAAATAATAAACAACTTCGAAACCTAATgcctaattaaaaataaaaaggaaaatcttAATTATTCGTTTTGTTttctaaaaaagttatttaggGAACTCTAATTACTACGTCAAATAACTCTTTtgatacattttattaagaCATGTTTAGCAGTGTAATTATATGTGTATACGCTTTTGCTCCAACTTGTGTATTTGTTCTAATGATTATAGttagtatagtgtattataaaaaaaatcttcgaatttgcaacttttgttttttttcttttctatgaAGAACATGAGCTATTACTGATTTACGTTTCTAAATTTACtggattattataaaaaaaaaactttaaatgtaatataccaattaaatgttttcataGGATTGCATCCAAATGCACAAACCTGTATGTTGTTTTGAAAAGTCAACAGTTCATTACAATGCAGATTTAAATTGTAAAAGGCACGGATCAGTACCTTACTCTGATCTAGATGTGTTcaataatttcatatttttaggATTTGAGTATGATCTAAAAATCGAAAGCAAAAAATGTCCGACAGGTTCCTCTAATTGtagatttaataatattttcacCTATTGATTTATAGCTGCTGAACTGACAGGTTTTAATGACCTTGAGTTGTACAGCTAGTGAGGGACATTAGACACAATAACATGCCCGGTATGTGGTACGATCGATATTGAAGTAAATAAGTTGTGGGACAGCTTTCATTCTAAATGTTAAAGTGATGCACCAGTGGTTTCTACTTGTTCTTCCAAAACAAGCCCATACCCCCTCCCACCCCCTCCTAACAAATCTCAGAATGGTGGGAGGTAAGTATAAAAGTTATCATGAGTTTCTTCTGCATTTACTCACATTTGTGGTGAGTAAAATTCTGaggcacaaaataaaaatcatatacgataaaagaaatgtttttgtaAGTAATACTTCTAATTTTGTAAGGGAGTAATTATTAACTTTAGatacaatacaattaaataaacatattactttatttcacatttacatattaattta

Function

symbol description
nkx2-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein Nkx-2.4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31468 True 3398 lncRNA 0.39 2 33650637 33654989

Neighbor

gene id symbol gene type direction distance location
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding upstream 980 33625486 ~ 33649657 (+)
insm1 NA coding upstream 139020 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 152316 33444402 ~ 33498321 (+)
naa20 naa20 coding upstream 213833 33431923 ~ 33436804 (+)
LOC103037759 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC108257743,LOC107714749,LOC107581488 coding upstream 574497 33070811 ~ 33076140 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding downstream 21086 33676075 ~ 33681836 (+)
ndufaf7 ndufaf7 coding downstream 134593 33789582 ~ 33798774 (+)
LOC103030910 LOC108444009 coding downstream 328205 33983194 ~ 34046385 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 396264 34051253 ~ 34069327 (+)
LOC103034505 LOC108444017 coding downstream 441500 34096489 ~ 34193035 (+)
G23356 NA non-coding upstream 71115 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 81695 33568394 ~ 33568942 (+)
LOC111195982 NA non-coding upstream 148286 33501237 ~ 33502351 (+)
G23289 NA non-coding upstream 290038 33360380 ~ 33360599 (+)
G23286 NA non-coding upstream 297376 33353000 ~ 33353261 (+)
G23427 NA non-coding downstream 230473 33885462 ~ 33887869 (+)
G23462 NA non-coding downstream 391601 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 592848 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 1008075 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 1021029 34676018 ~ 34679797 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 54926 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 481245 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 568775 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 809291 32837052 ~ 32841346 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other upstream 823698 32822344 ~ 32826939 (+)
cebpzos cebpzos other downstream 122953 33777942 ~ 33779903 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 239347 33894336 ~ 33964508 (+)
trdn NA other downstream 1571809 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2388442 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2594835 36249824 ~ 36458929 (+)

Expression


Co-expression Network