G23427


Basic Information

Item Value
gene id G23427
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33885462 ~ 33887869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31547
AACGGCTCGACTGAAAAGCGGTTAGAAGAAGCAGAAGGAGGGAAAAGTGGATGGCTGTCCAAGAAAACTCAGTTCACACGTCGTTGGAGGCCGGCTTGGTTTCAGATACAGGAATCCAGACTTATCTACGGAGGAAACGAGCAGACTGCTGCCAAAATAATCAGCCTGATCGGAGCTCAGATTGAGGCACTGGAGGACACGGGCGCTTTGGCTGGACAATAACTCCTAAAAACAGTAGACGGACCTTCTTTCTGCGGGCTGGCTCAGCCGAGGAACAGCAAGAATGGATGGTTGCTATCTGTGAAGCACAGATGAGCTCTGGGGAGCATTCATCAAATGCATGTGTAGTTCAATAACAGGCCTGTAAAACCCAGACTGAACAATGGTTAGATTAATTTACAATTCAGTTCATCACAGTCTCTACTTTCACCACTGCATTTGATTACTCTTTTACCATTTAGGATTGTTTATAGACAAACAGATCAAATGTGAATCTAAAgatctga

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0044782 cilium organization biological_process
GO:0070925 organelle assembly biological_process
GO:0030030 cell projection organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU31547 True 506 lncRNA 0.45 2 33885462 33887869

Neighbor

gene id symbol gene type direction distance location
ndufaf7 ndufaf7 coding upstream 86688 33789582 ~ 33798774 (+)
pax1 pax1,LOC103035152,LOC107564482,LOC107548404 coding upstream 203626 33676075 ~ 33681836 (+)
xrn2 xrn2,LOC107704080,LOC107669450,LOC107548427 coding upstream 235805 33625486 ~ 33649657 (+)
insm1 NA coding upstream 373845 33508074 ~ 33511617 (+)
cfap61 NA coding upstream 387141 33444402 ~ 33498321 (+)
LOC103030910 LOC108444009 coding downstream 95325 33983194 ~ 34046385 (+)
LOC103030598 cldn20,LOC103030598,LOC107679670,LOC105017817 coding downstream 163384 34051253 ~ 34069327 (+)
LOC103034505 LOC108444017 coding downstream 208620 34096489 ~ 34193035 (+)
LOC103029743 zdhhc14,LOC108444016,LOC107747944,LOC107679689,LOC107742328,LOC107560202,LOC108258056 coding downstream 318474 34206343 ~ 34245118 (+)
LOC103028593 LOC108258153,LOC108426258,LOC108444014,LOC107751776 coding downstream 375127 34262996 ~ 34269700 (+)
G23367 nkx2-4 non-coding upstream 230473 33650637 ~ 33654989 (+)
G23356 NA non-coding upstream 305940 33579267 ~ 33579522 (+)
G23349 NA non-coding upstream 316520 33568394 ~ 33568942 (+)
LOC111195982 NA non-coding upstream 383111 33501237 ~ 33502351 (+)
G23289 NA non-coding upstream 524863 33360380 ~ 33360599 (+)
G23462 NA non-coding downstream 158721 34046590 ~ 34047774 (+)
G23499 NA non-coding downstream 359968 34247837 ~ 34286895 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding downstream 775195 34663064 ~ 34667031 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding downstream 788149 34676018 ~ 34679797 (+)
LOC111196008 NA non-coding downstream 940967 34828836 ~ 34830350 (+)
cebpzos cebpzos other upstream 105559 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 289751 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 716070 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 803600 33076624 ~ 33081862 (+)
LOC103042732 NA other upstream 1044116 32837052 ~ 32841346 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other downstream 6467 33894336 ~ 33964508 (+)
trdn NA other downstream 1338929 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 2155562 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 2361955 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 3701237 37589106 ~ 37714382 (+)

Expression


Co-expression Network