G23683 (pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585)


Basic Information

Item Value
gene id G23683
gene name pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34676018 ~ 34679797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31849
GTCCAAACAAACTGTAAAtttgattacattacatttaaaaacaaacatttacagaACAGACAGGGGTGAAAAAACATAAGGGGAAAGACAATCCATTTTTGATATAGCTTACATGAATGTCCACATTAGTCTATGACTATCACCTCATTACTTTTGTCATCGAGCTGGCTGTTAGATTCCAGCACATGAACAATGTGTGCAGCTGAAGGTCTTTTGCGGGGGTCCTCCTCAGTGCAGAGACAGAAAAGCTCCACCATCCTCTGATAGGCGCCCCCAAGAGTAGCTGCATCAAGCGGAGGTCGAGTCCCCAGTCTCTCGTAATATGCATCTTCATCAAAGTCATCCTCATCAAAAGAGTCATcatcatcttcatcaccctCAGTGTCCAGCATCTCCAGATGAGGCACAGATAAAGTCATCATCTCCCACAGAGTGAGGCCATATGCAAAAATATCAGCTTTATCAGTAATCAGCCCCTCCTCCAGGGCCTCTTTGGGTTTCCATGGCTCCGTTCCTATATAGTAGGCATCTGGATTGCTCACCTGCATATTTTCATCTAACCGAAGGGATACGCCCACATCACAGATTTTGATACTTTCAAAGTCGCCTTTAATGACAACATTGCAAGATTTCATGTCTCCATGTAGTAGCTTCTTTTCACTGTGCAAGTaCTGTAAACCACGGGCTACATGGAGGGCCACTTTTTCAATGGTGGCAACTGGAAAGGCCGGTAAtccctcctctcttctcttttcaatCAGGTCATTGAGAGACTGTTCCCCTCCGTACTCCATAGCCAAGCATTTAGAGCCATCTTTTGCTGTGGTGAAGGCTCTGAAGCCAACAATGTTAGGGTGCTGCAGATCTTTTAAAATCTTTGCCTCTTCAGACAGCCGTTTTTGATAGATATTCGTCTGCTTCTTTGCACACTTGCTGTTGATCTTCTTTACAGCCCAAGGTGAATGAGTTTGTTTCCcgtttCTGTTCATAAGATACACATTCACTCCTGTCCCACATCCAAGCTTCTTCATAAATGGAGAGGCTGGGATAGTAACTGGAGTACTACAAGCACTACCTGGACTCTTCACTCGGGCTGGTTTTCGGGGGGTTTTGAAATCCGCGCTGCTCTCCATCTCACTCTCAGAGCTGAATATTTACTCAGAATTAACCGATATAAGTCTGTGTATACCGctgctcgctctctctttctctctctgttgtggAAAACCGCGCCCGCCGTTCAAATCCTGCCGGTCGGTTAGGTGACGCTCGATGTACGGAGTCAACAGAGGGACAAACCAAAGAGAACGCGTTTAAAGCTCATactgctc

Function

symbol description
pbk Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

NR:

description
lymphokine-activated killer T-cell-originated protein kinase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31849 True 1331 lncRNA 0.47 8 34676018 34679797

Neighbor

gene id symbol gene type direction distance location
esco2 NA coding upstream 76 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 50423 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 105266 34552343 ~ 34570752 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 374351 34285824 ~ 34301667 (+)
LOC103028909 NA coding upstream 391434 34277101 ~ 34284584 (+)
hddc2 hddc2,LOC107580122 coding downstream 137070 34816867 ~ 34820320 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding downstream 768845 35448642 ~ 35460339 (+)
gab3 gab3,LOC107557096 coding downstream 958550 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 1127670 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 1143399 35823196 ~ 35850191 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding upstream 8987 34663064 ~ 34667031 (+)
G23499 NA non-coding upstream 389123 34247837 ~ 34286895 (+)
G23462 NA non-coding upstream 628244 34046590 ~ 34047774 (+)
G23427 NA non-coding upstream 788149 33885462 ~ 33887869 (+)
G23367 nkx2-4 non-coding upstream 1021029 33650637 ~ 33654989 (+)
LOC111196008 NA non-coding downstream 149039 34828836 ~ 34830350 (+)
G23719 NA non-coding downstream 197496 34877293 ~ 34878980 (+)
G23727 NA non-coding downstream 237504 34917301 ~ 34917569 (+)
G23729 NA non-coding downstream 241076 34920873 ~ 34968242 (+)
G23748 NA non-coding downstream 525009 35204806 ~ 35205035 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 711510 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 896115 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1080307 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 1506626 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 1594156 33076624 ~ 33081862 (+)
trdn NA other downstream 547001 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1363634 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 1570027 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2909309 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3248558 37928355 ~ 37933989 (+)

Expression


Co-expression Network