G23719


Basic Information

Item Value
gene id G23719
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34877293 ~ 34878980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31901
CCTTTCACCCAGGTCATTTTAATCCACAGCTCAACACAGTAAAGACAGATGTTACACTTCCTGTCTGCGAAAGTGGACTAACGTGACCAACTCTGAAGATAAAGTGCAGCAGCGCCCAGGATTAAGCATCGCAGGGTGTGGGGATATACAAACAATGTACATAACGTGTCTTTTCCCCCTGAAACACATTCATAAAAATACAAGCATTGTGGGGTGATCTTATACATGTACCACAGTACAAACTGAAGGTGCACAGTCAGTCTTTGGAAATTTACCAAAATGTGAAGCACTCATGCGACatgaagagaaaaacaaaatcattaatttaaaaatattcccTCTAACAAAATCCAAACCAATGTACAGCATATTTCAAGGCACCAAAGGATAGGGGCAGGGGGGAACAATAGGAAACACAATACAAATGAGAAATACATCAGTAATACCACCCTGATGATAGCCAGGGCCTTTGGCTCACACTGACAGCAGACAGAAACAGCAGGTGTTATATGAATGTTCATGGGCTACCACACTgacctttttcatttttaattttctaggTGAATGGTATTTTTTGACCTGAACTGCAGTGATAGTGTGGTTTGTATTAGAGGGACACTCCGACCAGAATGAAAAAGCCTGCTTGACTCCTGGTTTGATTGGTGCTGCAGTAGTCTCCTAAAACAAGACTACACAAAGTTTGGCACATTGGCAAACTGTGGTCTACAGACATTTACTTTGGCTCATTTAGAACATTCAAAACTTGATAAGCTCTTATTTTCCTTATCAAATCTGAAAATTTGgagcaaataaaatattttagaacagTTGGCTGGTGTAAAAACACCACATTTTCTATGGTAGACTTGGCGGCAATACCCTAACCAGGCAAGTCCTTGGATAAGACTCCTAGCAATACATTCTACAGTAAAATGTTCCAGCAGAACATGTTACATTATTATCCACAGTGACTTTGTATATTTGTGCATTTAAATAATCACTAGCTTATACATCTAAAAGCTCACTGCCCATCTTCCTTTGAGTCATTggtctttatttcttttctttttggccCTCAGCCCACCACAAATCTTTGGCCACCAAAAGTCAAGTTTAGGCATGTCtgctatagatttttttttttgtactgaaaaTGCATACTGAAGGTGAAACAATCTTTTATACAAGTAATTTTGGAATAgaaatatatctaaataaaaaaatgctgaattttTGAATAGAGGAAATGCGTAAAGCTCAAACCAGCATTTATTTAACCAGAACCAGACCAGCATAAACCAGCTGAAAACAGACCAGCATGCGTGTGTTTCTGGAGGAAGGGTAAACACTAGTCAGTGTCTGGTTTAAAATTTGTGAACATAATTAGACATAATCtctgttggatttttttttttaatctgctttGCTGGAAAAGTAAAAGCTGCGCTAATGCTATCTTGGTTGTGGCAAATGCATACAGGTCACAGGCTAGTCTAGCAGAATTGGTTAAGCTCTGTACAGATTCCCTATGGCTGTGATGTATTTGCATAATGCATGattgatatattatatagatctaTAGATAGAGAGCACATATGAATTAAAGCatg
>TU31902
TCTGGCACTGAAACAAGCCAGTATCAGACATTTGGTTGCTTATTAGCATGTGCTCACAATGAAATCAACAAACCTCACCCTTTCACCCAGGTCATTTTAATCCACAGCTCAACACAGTAAAGACAGATGTTACACTTCCTGTCTGCGAAAGTGGACTAACGTGACCAACTCTGAAGATAAAGTGCAGCAGCGCCCAGGATTAAGCATCGCAGGGTGTGGGGATATACAAACAATGTACATAACGTGTCTTTTCCCCCTGAAACACATTCATAAAAATACAAGCATTGTGGGGTGATCTTATACATGTACCACAGTACAAACTGAAGGTGCACAGTCAGTCTTTGGAAATTTACCAAAATGTGAAGCACTCATGCGACatgaagagaaaaacaaaatcattaatttaaaaatattcccTCTAACAAAATCCAAACCAATGTACAGCATATTTCAAGGCACCAAAGGATAGGGGCAGGGGGGAACAATAGGAAACACAATACAAATGAGAAATACATCAGTAATACCACCCTGATGATAGCCAGGGCCTTTGGCTCACACTGACAGCAGACAGAAACAGCAGGTGTTATATGAATGTTCATGGGCTACCACACTgacctttttcatttttaattttctaggTGAATGGTATTTTTTGACCTGAACTGCAGTGATAGTGTGGTTTGTATTAGAGGGACACTCCGACCAGAATGAAAAAGCCTGCTTGACTCCTGGTTTGATTGGTGCTGCAGTAGTCTCCTAAAACAAGACTACACAAAGTTTGGCACATTGGCAAACTGTGGTCTACAGACATTTACTTTGGCTCATTTAGAACATTCAAAACTTGATAAGCTCTTATTTTCCTTATCAAATCTGAAAATTTGgagcaaataaaatattttagaacagTTGGCTGGTGTAAAAACACCACATTTTCTATGGTAGACTTGGCGGCAATACCCTAACCAGGCAAGTCCTTGGATAAGACTCCTAGCAATACATTCTACAGTAAAATGTTCCAGCAGAACATGTTACATTATTATCCACAGTGACTTTGTATATTTGTGCATTTAAATAATCACTAGCTTATACATCTAAAAGCTCACTGCCCATCTTCCTTTGAGTCATTggtctttatttcttttctttttggccCTCAGCCCACCACAAATCTTTGGCCACCAAAAGTCAAGTTTAGGCATGTCtgctatagatttttttttttgtactgaaaaTGCATACTGAAGGTGAAACAATCTTTTATACAAGTAATTTTGGAATAgaaatatatctaaataaaaaaatgctgaattttTGAATAGAGGAAATGCGTAAAGCTCAAACCAGCATTTATTTAACCAGAACCAGACCAGCATAAACCAGCTGAAAACAGACCAGCATGCGTGTGTTTCTGGAGGAAGGGTAAACACTAGTCAGTGTCTGGTTTAAAATTTGTGAACATAATTAGACATAATCtctgttggatttttttttttaatctgctttGCTGGAAAAGTAAAAGCTGCGCTAATGCTATCTTGGTTGTGGCAAATGCATACAGGTCACAGGCTAGTCTAGCAGAATTGGTTAAGCTCTGTACAGATTCCCTATGGCTGTGATGTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31901 False 1610 lncRNA 0.53 1 34877371 34878980
TU31902 True 1623 lncRNA 0.38 1 34877293 34878915

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2,LOC107580122 coding upstream 56973 34816867 ~ 34820320 (+)
esco2 NA coding upstream 201351 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 251698 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 306541 34552343 ~ 34570752 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 575626 34285824 ~ 34301667 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding downstream 569662 35448642 ~ 35460339 (+)
gab3 gab3,LOC107557096 coding downstream 759367 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 928487 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 944216 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 998213 35877193 ~ 35923957 (+)
LOC111196008 NA non-coding upstream 46943 34828836 ~ 34830350 (+)
G23683 pbk,LOC107717112,LOC107598104,LOC107676230,LOC107727585 non-coding upstream 197496 34676018 ~ 34679797 (+)
G23684 ccdc25,LOC107598073,LOC107675065 non-coding upstream 210262 34663064 ~ 34667031 (+)
G23499 NA non-coding upstream 590398 34247837 ~ 34286895 (+)
G23462 NA non-coding upstream 829519 34046590 ~ 34047774 (+)
G23727 NA non-coding downstream 38321 34917301 ~ 34917569 (+)
G23729 NA non-coding downstream 41893 34920873 ~ 34968242 (+)
G23748 NA non-coding downstream 325826 35204806 ~ 35205035 (+)
G23753 NA non-coding downstream 424992 35303972 ~ 35306133 (+)
G23817 NA non-coding downstream 584154 35463134 ~ 35467716 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 912785 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1097390 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1281582 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 1707901 33083642 ~ 33169392 (+)
LOC103037425 LOC108426312 other upstream 1795431 33076624 ~ 33081862 (+)
trdn NA other downstream 347818 35226798 ~ 35302347 (+)
LOC103040783 LOC108411309 other downstream 1164451 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 1370844 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2710126 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 3049375 37928355 ~ 37933989 (+)

Expression


Co-expression Network