G23753


Basic Information

Item Value
gene id G23753
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35303972 ~ 35306133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU31952
gttgccaGAGGAGGAATGCATgaggtgctgtaagatttttctggaaagcactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctctgcAAAaccagcacttcatgcttccctctgctgacaatatttatggagatgcagatttcattttccagcaggacttggcacactgcccacactgccaaaagtatcaattggtctcatataatattataattttcggagacactgatttttggttttcattggctgtaagccagaATCCACAAtaatacaagaaataaacgctttaaatagatcactctgtgttttcaactgaatttctgaaataaagtaacgtttcaatgatattcttattttttctgatGCACTAGTATGACACTGTGTCACTGGACCTAAAGTATGAGTTCGCGTTTAACAGCATTAGCCTTTGCAAAGGCAGTGAGCCTCGTGGACATACAGTATGAGAATCACTGAGGGCAGAGAGGCAGACAGCAGACATGCGCATATGAAGTATTTGAGTCCATATGCATACAGTGAGAATGTGCTGTGTAGTGTCTGTACAGTTGTTCTGCCATATGGTTATGGAGTTTTTGATCATGATGAAGACAGTCAGCTGTAACAGCATGAGTGAGGAGAGAAATAGGCCACAGGAATAATCCCACTTTGAAGTTGCTGGGTGCTATTTGCCGCTCGCAAATGTTAAAGCTCTCTGTCAGCAATGGAGGATTCAGTTGCTTCGGTGTCTGGTTCATTTTAATGAACAGCgagactggagagagaactGAAAAGCTACCGTTGTGTCAGATAGATTACATTCTGAGGAAACTTATGTCTAAATGTATACTTGACTGTGGATTATGATTTGAATTACACTGACTGTGTGatgcattaaaatgatttaaggcattattaaatgtacctaaacacaaGAATATGGAGTAACCGAGTAATGGCTCagttaaacattaaatacaggtattaaatattattacacAATCAGGTTATGTGTTGAATAATAAGTAATGCTTGAATAATAACTAATGATGAATGACGTATAACTTAAAGATGGTTTATGTCAAATAGATCATTTATCATCAATACTGTTCCTGGAGTAACTCTGTGCTACgaatttatatgtttatacctAAACTAATCTGTGCACGAACAGTTAAAGTAGTGATGGTTAAAGACAATGACTGTACACTTACTTGTCCAGCATAATAAATGTGAAAGTAGATGTCGTCCCATTATTTACATCTAAAATATTatgttaaatactgtaaaaatactaCGATAAGCCATTATTTCTCTTATCTAATGACTTATTACCCTTTATAATCATTACAATAAAGCTGTCTGCATATATCCCTTTAAATAAATTTGTGCTTAATAAATCATTGCCtactatatattaaataattctaaaaagttgacatttaaaaagcattaattcaatgtaaatgatgcccagttgtttatttttgtgactctttttgtaaatttgtaactGAACCAAGGCTAGAATAATCATAAGAGCATATAAtcattataaagcattttatAATTATGTGCAAGCACCAGTTAATGTTGTACataatattaatcattaattaattagacaatggattataaaaataaatgttagttATTATTTCTGTGCAATCGAGCTAAATAAACTATGAGTTTTCCATTAAAAGAAGTTTAATACTGTCTTAAATGCACTTGATTAATTCACTATTGTATTactgtaatgtgtaatgtatgTCATTTTTACATGAATAAAATGTGTGACATAAACAAACCTATTACCACACATAAGTAAACTGAcagtaaaaattatatattgtgatacattttaTTCATGTGTAATTGATGCAGATTTTTTCTTTATGTCAGTGTGTTTAATAATCTTGTTtgtaaatgagttaaaatgatgTGTTGGTTGACATAAAGTAGTTCTCACAAATGAAGCGTTGGGGATACAGTTTCAGTTACCattttgacctttttattttttggtttgcaTGATCATTTTTTGGTGTAGATATTTCTGGCATGTTAtaacatgtttattaataaagtgtAATAATGCATCcctactaaaatgttttctctaTTCTCTTTGATCTTG

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00051 Fructose and mannose metabolism
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU31952 True 2162 lncRNA 0.33 1 35303972 35306133

Neighbor

gene id symbol gene type direction distance location
hddc2 hddc2,LOC107580122 coding upstream 483652 34816867 ~ 34820320 (+)
esco2 NA coding upstream 628030 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 678377 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 733220 34552343 ~ 34570752 (+)
papola papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 1002305 34285824 ~ 34301667 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding downstream 142509 35448642 ~ 35460339 (+)
gab3 gab3,LOC107557096 coding downstream 332214 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 501334 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 517063 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 571060 35877193 ~ 35923957 (+)
G23748 NA non-coding upstream 98937 35204806 ~ 35205035 (+)
G23729 NA non-coding upstream 335730 34920873 ~ 34968242 (+)
G23727 NA non-coding upstream 386403 34917301 ~ 34917569 (+)
G23719 NA non-coding upstream 424992 34877293 ~ 34878980 (+)
LOC111196008 NA non-coding upstream 473622 34828836 ~ 34830350 (+)
G23817 NA non-coding downstream 157001 35463134 ~ 35467716 (+)
G23840 NA non-coding downstream 221795 35527928 ~ 35528159 (+)
G23842 NA non-coding downstream 238199 35544332 ~ 35544557 (+)
G23844 NA non-coding downstream 253954 35560087 ~ 35560322 (+)
G23860 mtmr8,LOC108444279,LOC107557116 non-coding downstream 443815 35749948 ~ 35797617 (+)
trdn NA other upstream 1625 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1339464 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1524069 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1708261 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2134580 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 737298 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 943691 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2282973 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2622222 37928355 ~ 37933989 (+)
G24390 NA other downstream 2786841 38092974 ~ 38098324 (+)

Expression


Co-expression Network