G23842


Basic Information

Item Value
gene id G23842
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35544332 ~ 35544557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32052
atttctaaacaatactcaactattttgagttagttgaacatttgtgggcacatatactgtgctattaaaactgagatctttgagttgaaccaacttataataactgagtttagtctgttatcattaacagcttcttttccattggcttctgtcacaaactatttgcatactgggtgtgtccaacagtttctgactaacactcaccatcagtgtgtagtgattccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32052 True 226 lncRNA 0.45 1 35544332 35544557

Neighbor

gene id symbol gene type direction distance location
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding upstream 83993 35448642 ~ 35460339 (+)
hddc2 hddc2,LOC107580122 coding upstream 724012 34816867 ~ 34820320 (+)
esco2 NA coding upstream 868390 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 918737 34597882 ~ 34625595 (+)
reps1 reps1,LOC107727647 coding upstream 973580 34552343 ~ 34570752 (+)
gab3 gab3,LOC107557096 coding downstream 93790 35638347 ~ 35676321 (+)
LOC103040467 LOC108444278 coding downstream 262910 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 278639 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 332636 35877193 ~ 35923957 (+)
LOC103037324 NA coding downstream 397538 35942095 ~ 35964597 (+)
G23840 NA non-coding upstream 16173 35527928 ~ 35528159 (+)
G23817 NA non-coding upstream 76616 35463134 ~ 35467716 (+)
G23753 NA non-coding upstream 238199 35303972 ~ 35306133 (+)
G23748 NA non-coding upstream 339297 35204806 ~ 35205035 (+)
G23729 NA non-coding upstream 576090 34920873 ~ 34968242 (+)
G23844 NA non-coding downstream 15530 35560087 ~ 35560322 (+)
G23860 mtmr8,LOC108444279,LOC107557116 non-coding downstream 205391 35749948 ~ 35797617 (+)
G23862 amer1 non-coding downstream 219412 35763969 ~ 35770604 (+)
G23866 NA non-coding downstream 253155 35797712 ~ 35798076 (+)
G23869 NA non-coding downstream 276743 35821300 ~ 35821831 (+)
trdn NA other upstream 241985 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1579824 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1764429 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 1948621 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2374940 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 498874 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 705267 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 2044549 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2383798 37928355 ~ 37933989 (+)
G24390 NA other downstream 2548417 38092974 ~ 38098324 (+)

Expression


Co-expression Network