G23862 (amer1)


Basic Information

Item Value
gene id G23862
gene name amer1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35763969 ~ 35770604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32078
GGAAAAATGCACCACACAACAGAAATGACTGACATTAGCTTTGTTAGGTTTGAGATGGGAGTTTATTTCCAGTTGAGAAGTGTGCAAGTtgattgttctgtgtttttgagtgtatCAAAAGCACTGGGAGTGTCCAGTACTGTCTGAGGGGCAGTATTAGTAAGGAAAGTGGTCTGGCTGGCAGGGGATAAATCCTGCTCTTTGTGTCAAAACATTCATTGTCTGTGTATATACATCCATATGTataaaaaagcaatattttCTTGTGATGATTTGTGCCAGCATATACACGCCAGCAAAGACAGCGTGAACATTCAATCACTGATCACAAAAAGGACTGTACCAAATgccaatacaaaataaaaacactacaaacaattaaaaactcATCACAAGCTCATAAACAGCATTGATTTAGTCAGAGAAAATGTGTTgattgtggggggGGATGTTTCCTTTGGCGCAGTTTGGGAAACCTACACCATCCAGTAggattaagattattaaaacattCTCTTACTGGTAAGCTCTCTTACTGACCTAAACACTTAAAGGTGCCACAAAACgcatttatttagtattatattgttattgtaatattgttcTATAATGGCTAAATACTTATATCACTCGTGTAATTTAATTagctctgctctgattggctggtttaCAGCGAGGCACTGTGATGATAGCTTACACAGAACAGCCACAGCACAAGTTTGTTCAAGCACTGTACTAAGAACCCTGTAATTACAGCATGTTTTCTAACGAGTCCTGTCCACACAAGACGTACAGGATATTGCTGTTCTCTGAGAAGGTAGTCCATCTAGCTAAAGGGCCTCATCTGAAATCATGCTAGGCTAGAGTTAGCTTTTAGCATAGCATGGATTGAACTCTATCAACCAAAGCAGGATTATTAGGTCCGTAATACCCTTAGCAACCCATAGTTGTCAGTCTTCAGTCTTAAGGTGATATGCACGGTCACCAGTATTACTGACACACAGGCGGTATGATTGTCTCAGAAAACTGACCACACAAGCACCTTATTCTCAGGAAGTGGCCACTGCATCAACGCTGGTGTGTGTAAAGATTAATTGGTCAagaatattatgtaaaagttttcTTTCTTAACTATGCCAAAGCAAATGGCGTTTTACATTCTATGGCACCTTTACAAAAAGGGaatttcattcttttttaaaattcttcTGCATAATAAAACAGTTGAGATACAAAGAACGTTGGATAGagtggtttggtgtgaaacATTCAAGAGAAACATGCACAGAAAGAATTATTTATCAAGAAAATCTGTGTAAACTCCCAATATTTTTTCAGTGGCTGGAGGCCAACACTGTACGTAACCCCGCACTTTAGTTAATCTTCAAAATCTCTGTTTTTCAGCTACAATTCGAGATACTAGCTGTACAAGGCTAGCATGGTAACATTAGCTTAGGTTACACagctttagcatttgtttgtttatcaaaCATCTGGCTGCCTTGTTCTGTGTAAAATTTAACCCAGGTTCTGTTACAATatagctttaaattaaaaggCTTTATGTTGCATTGTGATTGTTCGCTTATCATTagtttgtttaattaacatttctcCTGCATCACTTGTTTCATAGTGAGTTTAATCATTGCAATTTCATGGTTCTTTCTTAAAACTGAAGGAGTACCAGGCCACAGCATTAGTGGTAACAGTGGAACCATTGACAAATTTAAAAGCTCTTAAAAGCTCCCTCGCAGAAAGTAATTACACCaaatgttgaaaaatgcacTGCCTGAAGGCAGACACTATTTTACCAGATTTTAGAGAAATTATTGGTCTAAACCATAATTTTGAAAAAGGGGTAAACATAGGGTGTATGTCAAAGATACATTTAGGTTCACATATGGTTTAGCTTAATACATAATATGGCTATATTTGTGTTGTAGAAATGGTAACAACTAGTTAGCAAGTGGATCATCATTACTGTCAAAACGTTTCATTATAGTGAacaatttcacaccaaaccccaCTCTGAATTTTATCCATTTCAAATATTGAATTATACAGGGAAGTTTGAAATTTGCAGAATTTTCCTTTAACAAAATGTTGAAATCTATTCTTTGcagtgttttctggaatgaCTAGACGcaaagctaacctagctagtttaTCCTGCCTTTTTATACTGTAGAAGCTTTAAAGCTATTATCTAAAGCTGCCCAAAATAGCTTTTAACACTTAATGGAACAATGtgatgtgtttgtttattttaggggTGTCCAGTCTTCTCCGTACTGGTACGGTGTAGCTGCAGGTTTTCAATCTAAACAACCAGCGGCACAAATGATTCCAATTGTTTGATCAGTTTTCAGTCTGCAAACAACTGTTCAGATGTGCTTTTGCTTGGCgagaatgaaaacctgcaggcACACTTAGGTTAAACTGGACATCCCACACTTAGTATACAATGTTATAATACCTTCACTAGCAAGCCAATGTCTTTTCTTTagtacagaaaagaaaaattgaTAAATGGGTGAGTGTGTTTTGCTCTTGTGCTACGTTCTCGGCCGAACTATTACAGGCCTCGTGTTAGCTGGCGTAATCACTAACCAGGAAACTAAAGGTGTGTATCATTTTTCTCCTTTAGAAACATTAAGAGCATTTTAAAGACCCCTAGTATCTTATCCTGTGGTAAACAACCAACATTTCAAACACACTTATGGTTTCTTGTGGACATTTCTGAACATGGCTGTGTACCCCCACGTTTCGCTGAGCGTGCTCACTAGAATTTCCTtactaatgtaatgtagtgaagTGAAGAAATGTGTAAACTAAAAcgttaattttaaaataaactatttgaaaatgtaaacataaaaacagcGTAACAGCATATTTTAAAAGGGAATATAAATCCCAACGAATCCCATCAAAACCCAACTCACATTCACTGTCCATTTGCTCTTAAAGAAAAATGCCTGTTACTTCAAATCACTGCCACATGAAATGAACCTCCAACAGAGATGGAAACTTAAAtatacaaacactgtctctctctgttctgttaGCATACAGGCTATACTGAAAATAACAATTGTCAAATGGATACGTATAATCAAGTCAAACAAACgttcagaacaaaaaaaacagaaaaaaagctcTATATCTGGTCAACAATGATCATAAACACAACTGCTACATGTATGCAAAACAACatgtctaataataaaaaacacaatggcttctaaactgaaaaataaaaacaatggtGGAAAAGAAAATCAACATCTAcacattttctaaaatatattagCTTATCTGTAGAGAACAGCAAAACTGTGTGGGAGGACAGACGTGTATACAAATCAAGAATGGTCAGTAAACATCCAGCTGTGTCTTTGGTGATGAgatctacatctttttttttttttttttttgaatgaagaagaaaaaagacaaaaaatatgatTGTTCACATGGTACGTTTAGGGGTTGCTGTGGAGAACCCCCCTTCCAGTTCTGCCCTCCGACTCTTGGCTGGGATTTCTCTTGGGTTCTCGGACTGGTCAGAACGAAGATGGGGTATACCCTGGGTGATTCCAACTGGTCGACTCTTCCACTGCGTTGCTGATGGTGGATTACTGTAAGGGTACAGGGCATCGCCTCCACCGGCCATTACGTCTCCTTCAGCAGCTACTCTGCCAGTACTCGATGAGCTGCCACTGTGACAGGAGGCCTGTAGGGGGAGGTGTGAGGGTCTGACTGTTGATTGACGGTTAGAAGAACAGCTTGACATTGTTTCCATCCAATGACTGCCTTGGGAGAACTTTTGCTGCTGCTGTGAAGAAAGACTTGCTTTCTGGGAGGATTCAAATACACAAGCACGCCCCTGCCTCCAACCATCTCCATGATCCCTTGCTGGATGCCGTGGTAGCGCCATGTCACAACAGCCCCCTGTTTCCGGGTTATTTTTCTTGTGGTGGAAAAAGGGAGCCATCTTTTGACCATGTGATGCTACTGATGCGTAAAGCTCGCTGGTGTGGAACTCCAAACTATCTGTATCCAGAGAGCGGCTACGGCGGTTAAGTGCTAGCGGAGCGGGAATGGGAGGGCATGGCCGGCCCAGGCTAAGGTGCCGAGGAAGGCTTGTGATGCCCCAAGCATTGCTGAACAACAAGCTCTGCTCATAGGCATCAAAGGTTCTTTGATCACACTCAGCAAAGGCATCCTGCTGCAGGTAGCAGCCGTCATCCTCAAACGGCTCATAAGGGGAAGTTAACTCCTCCTCTGCCTCAACAAGCTCTGTTTGCTGTTCGCATTCACCCTCGTTTTCCATATCAACCACATCAAACGTAACAATGGCAGGAAGAGCACTCAGGCTTGGCCCAAAAGGTGAGCTGGATTCTGAACCATCTAAGCTCTCTGTAGAGTTGCGGTACAGTCGAGTGTTTTTGGTGAAATCTACCAAGGCTTGTGAGAAACAGACCATGAGCTCCTCTTGGGACTGGCTGCGGCCTCCGCTCGGTGGTAAGGAGCTGCCATTCGATGCTTCGCAGCGTTCTTGCTCAGGATACAGGACCATGTCTTGAGGAGGACTAGGTGTCTTTGAGACTTGCGGGCTACACCTTGAATCAGCTTTAGGTCTGTATAAAGGTTTGTGCGTGAGCTGAGACCCGCTGTGAGACAAAGCCTCCTTTATGACTTGGCCTCCTTGCGCTGATCTGGCACCATGCTGATGGAGCCCTTCCTCAGCTGAGCTTTTGCAGGTATCCTCAATATTTGACTCACTATAAAAGCAATCCCCACTATACAGATCTTTGGATGGACTTCTCAGGTTCTGCAACTCACAGCACAGCAAGGCATGCTGTATCTTACTGAGTCGTTCCTCCTCGGTCTCCATTGCGCCAGTTTCCAGTGCATACAGCAGGTCTCCTTTACCTTTGCTGCCCTGCAAGGGAGCTCCCAAGAATCCGTGACTGTCTTTCGAGGGAAGAGGTGGACTAAGCAATCGGTCATCTGGCTCAAAAAGTTCATAAAGGGCATCGCCACTATAGCTGTCCCGTGGAAGCCTTTCTTGCCGCGGACGTTCCCTTGTTTCCTCATCAGCTCCCGGTGTGGTGGAATCGTAGTACCCCTCGTCACTGTTAGGAACAGACTCTTGACGGTCACTCTGTGGGGTTAGAAGGTCAGTAGGAGTAAGGGCTGTTTCTGTGCCCCCCAAAAAGCTAGTGCTGGTGTTGCCACTGCTGCTTGTAGTGGCAGTATGAAatgtgctgattggctgatcaggtGTGATTGACAAGCTGTCAGTCTGCTCTGATGGTAGGTAGCAGACCTCGTTGCCAGTATCTGACTCCCAAAGACTATGTAGATAATCACTGTCCACTTCATCTGGAGTTGCCATCTCCTCTCCGCCTCCCTGATAAGTAATAAGGCAAGAGCTGCGTTTGCCAGCATTGCGACTTCCCCTCTCCCCTGAAACTGAACTCTCAGCAACACTGACATCATCCTGGTCTGCAATTATGTCCCCACAACCAGTAAGAGAGTCAAAGCTCTTCAAAGAAGACACATCGCCAAAGATCATATTCACATTGTCAGAGGAGGCAGACATTGTAGGTAACTCGCCCTCAGGCACGTCAGCATTTAGCTCAGCCAGGCGAGCCATCTCAGAGTCAGCAGATAACGGCTGGCGATATGTAGACAATCTggcctttctctttctttcctcttcctcctccttatCATCATCTTTTCTTTCATCTCTCCTCGTGTCTCCTTCCTCTGCCTCACCCACCTTCCCCTTGCTCCGTCGTTTCTCAGGCACTAGAGTTTCGTCCTTTGTACATTCGTCGGCTGCAGAAGCAGACGGCTTTTCAGAATTGCTGCCATTATCTGCAATAGGCACAACTGGTTCCAAGACCTTGCCCAGACGACCATCACCAGCATCGCTGAGACGGCCAGCATTCTGCTGAGTAGCAGGCACTGTTTCACCCAATGACATTTCAAACATCTCATTTTTATCCAGTTcaacatgtttgttttttcgGTGTCTTCTAATGCTGCTAAACAGACCTCTAAGGCCTCTTCTTTGTCGTGGGAGGGACTGCGACTTTGCAAGACCTTCACGCATTTTTTGTGACTCACTCGAGCCATTCGGGTTGTGGAACTCAAAGTCTGCCGAAGTTATATCACCACTCCCCCTGATGCTTTCTTCCCAGCATCCTCTGCTCACGCCATCATACGTCTGGCTCTTGGTTACACCTGTTTTGGATGAGCCCCTTCCTTGTCCTTTTCCCCGTCCTCCAAAGAAGCTTGGGAGCATACAGATGCTCTTACGACCTCCAAAAAACCTAAATGCAGTCTTCTTTAGCTTCCCCGTTGGTGATGTCTGGGACTGCTGAGGATCAGGGGATACGGAGTCTGATGGTGGCCCACCGGCCGCACCAACCACCTCACTTCCCGCTAAGGTCTCCATGACAACTCAGGAAATCACTGCTAGAGTGGTGTACTCATGACAAGGTACACTCTGTTCCAGGTCCAAATGCAAGGTTGCTGTGAAAGAGTGCACTAAACACACTCTTT

Function

symbol description
amer1 Predicted to enable beta-catenin binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be active in plasma membrane. Is expressed in several structures, including adipose tissue; caudal fin; central nervous system; digestive system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteopathia striata with cranial sclerosis. Orthologous to human AMER1 (APC membrane recruitment protein 1).

NR:

description
PREDICTED: APC membrane recruitment protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32078 True 6585 lncRNA 0.43 2 35763969 35770604

Neighbor

gene id symbol gene type direction distance location
gab3 gab3,LOC107557096 coding upstream 87648 35638347 ~ 35676321 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding upstream 303630 35448642 ~ 35460339 (+)
hddc2 hddc2,LOC107580122 coding upstream 943649 34816867 ~ 34820320 (+)
esco2 NA coding upstream 1088027 34670238 ~ 34675942 (+)
scara3 scara3 coding upstream 1138374 34597882 ~ 34625595 (+)
LOC103040467 LOC108444278 coding downstream 36863 35807467 ~ 35810107 (+)
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding downstream 52592 35823196 ~ 35850191 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 106589 35877193 ~ 35923957 (+)
LOC103037324 NA coding downstream 171491 35942095 ~ 35964597 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding downstream 840659 36611263 ~ 36619989 (+)
G23844 NA non-coding upstream 203647 35560087 ~ 35560322 (+)
G23842 NA non-coding upstream 219412 35544332 ~ 35544557 (+)
G23840 NA non-coding upstream 235810 35527928 ~ 35528159 (+)
G23817 NA non-coding upstream 296253 35463134 ~ 35467716 (+)
G23753 NA non-coding upstream 457836 35303972 ~ 35306133 (+)
G23866 NA non-coding downstream 27108 35797712 ~ 35798076 (+)
G23869 NA non-coding downstream 50696 35821300 ~ 35821831 (+)
G23872 NA non-coding downstream 57828 35828432 ~ 35830702 (+)
G23876 las1l non-coding downstream 90598 35861202 ~ 35863662 (+)
G23929 NA non-coding downstream 153740 35924344 ~ 35924568 (+)
trdn NA other upstream 461622 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1799461 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 1984066 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 2168258 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2594577 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 272827 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 479220 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 1818502 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2157751 37928355 ~ 37933989 (+)
G24390 NA other downstream 2322370 38092974 ~ 38098324 (+)

Expression


Co-expression Network