G23876 (las1l)


Basic Information

Item Value
gene id G23876
gene name las1l
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35861202 ~ 35863662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32097
CACACTCCATGGCGACCCACGTAACACCGCATTCCGTTCCTGGACAGTTTCAGCGCTCAAATTCTCCTGCAGGTCCAGACTGGGTGGAGCCTGTCCCGACCCAGGGGTGTGGTTTGGAGAGTGGGCATGTCTGTTCTGTGTGGAACCCTGCAGTCTCTCCTGAAGGCTCTCTAGTGTGTATACAGGATGGGAGGAGTCAATGTTGCTAGGTGAACAGTCTCCATGGTTAGTCTGAGTGTAGATGCTGCAGAGGCGTAGCAAATTGTGTTGCGTTGCTGGGGGGAGGGGCATCTCCATGTCATTTAAAATCTGTTGGAGCAGGTACGGTGTTGCTGGACATGGTGCATTCAGACATGCAGTTATGAGATCTTGCCACTGGAACGAAATTCTACTAACAAAAATCCTCTCCTTCATGATCTTCACCCTTCTAAtgaTTCTACTGTTGCAGTGCAGAATCTCTGAGATCCAGGCTGATATGTAATAAGCCCTGTGACTGGTCATCTCATTAGACAGCTCAGCGAATAGCTTCTCCAGGATCAGAGTGACAAACAAGGGTGAGTTAAGAACCTTCCACATCGGAAACCAGAAACGCAGAAACACTTGAGGCAAAGATGGAGTTAATGGGTCAAACAGATCCTCTGAGAATaaggaaaaaaggag

Function

symbol description
las1l Predicted to enable endonuclease activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be part of preribosome, large subunit precursor. Human ortholog(s) of this gene implicated in Wilson-Turner syndrome. Orthologous to human LAS1L (LAS1 like ribosome biogenesis factor).

NR:

description
ribosomal biogenesis protein LAS1L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32097 True 660 lncRNA 0.49 3 35861202 35863662

Neighbor

gene id symbol gene type direction distance location
zc3h12b zc3h12b,LOC107557112,LOC107741193,LOC107597257,LOC107672716 coding upstream 11011 35823196 ~ 35850191 (+)
LOC103040467 LOC108444278 coding upstream 51095 35807467 ~ 35810107 (+)
gab3 gab3,LOC107557096 coding upstream 184881 35638347 ~ 35676321 (+)
serinc1 serinc1,LOC107675227,LOC107598085,LOC107727646,LOC107675084 coding upstream 400863 35448642 ~ 35460339 (+)
hddc2 hddc2,LOC107580122 coding upstream 1040882 34816867 ~ 34820320 (+)
msn msn,moes,LOC108411308,LOC106567791 coding downstream 13531 35877193 ~ 35923957 (+)
LOC103037324 NA coding downstream 78433 35942095 ~ 35964597 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding downstream 747601 36611263 ~ 36619989 (+)
LOC111191796 NA coding downstream 763106 36626768 ~ 36628605 (+)
stard8 stard8 coding downstream 809309 36672971 ~ 36796896 (+)
G23872 NA non-coding upstream 30500 35828432 ~ 35830702 (+)
G23869 NA non-coding upstream 39371 35821300 ~ 35821831 (+)
G23866 NA non-coding upstream 63126 35797712 ~ 35798076 (+)
G23860 mtmr8,LOC108444279,LOC107557116 non-coding upstream 63585 35749948 ~ 35797617 (+)
G23862 amer1 non-coding upstream 90598 35763969 ~ 35770604 (+)
G23929 NA non-coding downstream 60682 35924344 ~ 35924568 (+)
G23967 NA non-coding downstream 140979 36004641 ~ 36039409 (+)
G23968 NA non-coding downstream 151423 36015085 ~ 36038596 (+)
G23996 NA non-coding downstream 318484 36182146 ~ 36182496 (+)
G24019 NA non-coding downstream 460178 36323840 ~ 36324357 (+)
trdn NA other upstream 558855 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 1896694 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 2081299 33777942 ~ 33779903 (+)
LOC107197779 LOC107197779,LOC108426271,LOC106607680,LOC108257511 other upstream 2265491 33587529 ~ 33595711 (+)
LOC103036694 LOC108426313,LOC108257731 other upstream 2691810 33083642 ~ 33169392 (+)
LOC103040783 LOC108411309 other downstream 179769 36043431 ~ 36096726 (+)
ar ar,LOC108443198 other downstream 386162 36249824 ~ 36458929 (+)
LOC111194342 NA other downstream 1725444 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 2064693 37928355 ~ 37933989 (+)
G24390 NA other downstream 2229312 38092974 ~ 38098324 (+)

Expression


Co-expression Network