G24047


Basic Information

Item Value
gene id G24047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 36800897 ~ 36802245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32316
AGCACAATATCAACATCAATATCAGTACAGCTCATTCTTCTCATTAAGgatgtgttcagactgcagacaaattgaatttgaatttgtttCTTAAATCAGATCTGTTAAAATCACTGGGATCAGATCTGATTCgcgtatctgcatgggttgctgtggtaacgaGGTTTGGCTCTTCTTGGACCCCGGCACTAccaaaaatcaatctggatacaatgtAGTTTAGCCCAAAAATCGGATTTGTTCACCTGTACCTGCAGGTCTGAATTTACAGCCTTATTGACAGACTGATTACCGTTctcttacttttatttttcttgcttatcttctttttaattatttctcttgtatcatatatatatataatttttttttcaattctcttttcacttcttttttttttctttcccccgtcttctttctcctctttctctttttttttttatttttctgttctcctttttccattttctctcctttcatctctctctcgctttgcctctctctttgtttcttttctttctgattTCTTTTTCATGgcttcttttgtttttcactCTCCTTTTTCTTGTctcatgtcttttttttctattctttgtCCTGTTTCTCTGTAGTCTGTTcttctttattcttctttattcATTTGTACTCTTTGTTTAATGTCTCACTCAGCTCTACTCAAGTGACATCATTGACTCTCTGTGTTCTCTTCAGaaattaaagtgtgtgtgtgtgtgtgtgagcagtatTGTATCTGGGCATTATGTCTGATCAGtgttttgtattatatattatgtgtaAAATACGGAAAAGCTTTAACTGAAGTTGTTTTAAGTGTGATACAATCTTTCACTTGTGTGCCTTCATCAttaaatatgtgtgtatgtaagtatgtatgcttatatatatatatttgtgtcgtgtgtgtatgtatgcgcACACATGTAGCTTTTTTATTATCTTGTTCTCTTTACAAGCCTTGAACTGATAAACTGAATCTATATGCagtttgtgtttctgtgctgatctgagatcagatcTTATGTCCAAACCAAACTCACTAAAACTCTAAACTGCTCTCAGCTCAGAAACACCGCTCCTCCCCCCCTCTGTCCTCCAGCCCTCATGtcttactttaatttatttctttcattacaTCTTCCAGATATCATTATCCAAATgcaataaagtaataaatacttAATGCTATAAATCTATACAATGTTGCTTGTGAACTAGCAAGAAATTTTGAGTTGGTAAAACTGcctaatgtgtgtgtttaatccCTGCTGAACAGTTTAACTGTTGTGAAGTTTTGTTTGTGTTGCAGAATTAAACGTATGTCTGTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32316 True 1349 lncRNA 0.50 1 36800897 36802245

Neighbor

gene id symbol gene type direction distance location
stard8 stard8 coding upstream 4001 36672971 ~ 36796896 (+)
LOC111191796 NA coding upstream 172292 36626768 ~ 36628605 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding upstream 180908 36611263 ~ 36619989 (+)
LOC103037324 NA coding upstream 836300 35942095 ~ 35964597 (+)
msn msn,moes,LOC108411308,LOC106567791 coding upstream 876940 35877193 ~ 35923957 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding downstream 180937 36983182 ~ 37003775 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding downstream 635838 37438083 ~ 37490233 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding downstream 695644 37497889 ~ 37503953 (+)
igbp1 igbp1 coding downstream 708689 37510934 ~ 37517867 (+)
LOC103021778 NA coding downstream 831536 37633781 ~ 37637628 (+)
G24046 NA non-coding upstream 377 36799918 ~ 36800520 (+)
G24041 NA non-coding upstream 177635 36622118 ~ 36623262 (+)
LOC111191795 NA non-coding upstream 194643 36605539 ~ 36606254 (+)
G24037 NA non-coding upstream 247080 36553393 ~ 36553817 (+)
G24034 NA non-coding upstream 285154 36513840 ~ 36515743 (+)
G24069 NA non-coding downstream 88332 36890577 ~ 36895300 (+)
G24144 NA non-coding downstream 208725 37010970 ~ 37013258 (+)
G24160 NA non-coding downstream 349194 37151439 ~ 37151671 (+)
G24164 NA non-coding downstream 413841 37216086 ~ 37216521 (+)
G24168 NA non-coding downstream 429545 37231790 ~ 37313329 (+)
ar ar,LOC108443198 other upstream 341968 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 704171 36043431 ~ 36096726 (+)
trdn NA other upstream 1498550 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 2836389 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 3020994 33777942 ~ 33779903 (+)
LOC111194342 NA other downstream 786861 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 1126110 37928355 ~ 37933989 (+)
G24390 NA other downstream 1290729 38092974 ~ 38098324 (+)
G24431 NA other downstream 1430348 38232593 ~ 38237041 (+)
G24463 NA other downstream 1557090 38359335 ~ 38382310 (+)

Expression


Co-expression Network