LOC111196047


Basic Information

Item Value
gene id LOC111196047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37259808 ~ 37269100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32461
GTAGCAGGTTGGGTTTGTTACCCCACCTATACTGCTGGTGAAGCTGTGTGGCTGCTTTAAATTACTGGGCGGCCCCTTTGTACTCTATATATGGGTAGGGGATGACTATTCATGGTGCACTTCCTGTCCCCCCTCCTCATTGCTCCGGGCTCTGACTTCCGTGCCGGCAGCGTTCAGCGTGGAGTTTAGCGCGATTGTTTGCGTTACTTCTCAAGAGTTTCAGTTGCGGGCTCGTGGTGTTATTGCCAGTCCAGCGCGGCTGTGTGTCTCTGACTGTGTCAGTGCAGTTTCACTTTCACTAAGgttttagTGTCCAGATTGTGCTGACTGATTCCAGCCTCCCCacagtgctgctgtttttgcctgagtttatttagttttgtttcatTAATTTTCATTTGCTCCTAGTTATTTTGagtttttgtcttgcttttcttcatttcatttgttaaatcAGCTTTGATTTGCCTTTAGTTATTTTGATATTTGTTgtattgatttttcttttgtctttattttgagttaagatttgctggagtttatttttgtgtattttttttctttattggattaaaattatatttctgctttatttttgatttgctggtttggACCTTTGAGGTTTATTCTGGCTTATTAATTTGGGATTTGCTTTGACTTAATTTCAGGTTTATTCCTGATTTATTAATTTGGGTTTGCTTTTGATTGATTCctttttgatttatttctgatttattttgtgggagtttttttattggattaaattaatatttttgctttatttctgaTTTGCTGTTTTGGACCTTTGAGGTTTATTCTGGCTTATTAATTTGGGATTTGCTTTGACTTAATTTCGGGTTTATTCATGATTTACTAATTTGGGTTTGCTTTTGATTTCTTTTTGGTCTATTTCTGATTTATTGTGTGGAGTTGCTTTTGACCTaacctctgtttatttaatttttttttgctgagtttgcttctgatttaatttattttgccaGATTGAACTTTCATTGTCCATTTACTTTAACAAAGTTTAAGTTTGTTTCGGTGTTTTTttgaattaacaaaaacaagaacagtGGTTGTGGAATTCCCTTCTTGGCTGTGTGTTTGTCTTTTTAGTGTTGGAGTGGTATAAGGTGAGGTTGTAAGAGACCAGGGCCCATAAAAAGATAAGTACATTTCGAGCAATTGTAATTGGTCTCTCTCCCTTCACCGCTGGTAGcttttaataattgttttttttctttgtgtctcTTAGTTGGACCGGAGCTGTGGGCCAAAGCGGCGGGTTCGGGG
>XR_002651990.1
CAGGTTGGGTTTGTTACCCCACCTATACTGCTGGTGAAGCTGTGTGGCTGCTTTAAATTACTGGGCGGCCCCTTTGTACTCTATATATGGGTAGGGGATGACTATTCATGGTGCACTTCCTGTCCCCCCTCCTCATTGCTCCGGGCTCTGACTTCCGTGCCGGCAGCGTTCAGCGTGGAGTTTAGCGCGATTGTTTGCGTTACTTCTCAAGAGTTTCAGTTGCGGGCTCGTGGTGTTATTGCCAGTCCAGCGCGGCTGTGTGTCTCTGACTGTGTCAGTGCAGTTTCACTTTCACTAAGTGTTGGAGTGGTATAAGGTGAGGTTGTAAGAGACCAGGGCCCATAAAAAGATAAGTACATTTCGAGCAATTGTAATTGGTCTCTCTCCCTTCACCGCTGGTAGcttttaataattgttttttttctttgtgtctcTTAGTTGGACCGGAGCTGTGGGCCAAAGCGGCGGGTTCGGGGATGTGGAATGCTGTTCACCTTTCCTGTAGTGTAGAGCACGCTGGGTGTTGAGATGTGTGGTTTGTAGTGTTGACTATTTCCTCTTCCTGTACTTTCTTCTGCCGTGGTAAGCCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32461 True 1305 lncRNA 0.37 4 37259808 37269100
XR_002651990.1 False 592 lncRNA 0.50 3 37259812 37261621

Neighbor

gene id symbol gene type direction distance location
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 256033 36983182 ~ 37003775 (+)
stard8 stard8 coding upstream 462912 36672971 ~ 36796896 (+)
LOC111191796 NA coding upstream 631203 36626768 ~ 36628605 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533 coding upstream 639819 36611263 ~ 36619989 (+)
LOC103037324 NA coding upstream 1295211 35942095 ~ 35964597 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding downstream 168983 37438083 ~ 37490233 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding downstream 228789 37497889 ~ 37503953 (+)
igbp1 igbp1 coding downstream 241834 37510934 ~ 37517867 (+)
LOC103021778 NA coding downstream 364681 37633781 ~ 37637628 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 700134 37969234 ~ 37975259 (+)
G24164 NA non-coding upstream 43287 37216086 ~ 37216521 (+)
G24160 NA non-coding upstream 108137 37151439 ~ 37151671 (+)
G24144 NA non-coding upstream 246550 37010970 ~ 37013258 (+)
G24069 NA non-coding upstream 364508 36890577 ~ 36895300 (+)
G24047 NA non-coding upstream 457563 36800897 ~ 36802245 (+)
G24188 NA non-coding downstream 218038 37487138 ~ 37492278 (+)
G24219 taf1,LOC108412743,LOC107596195,LOC105893216 non-coding downstream 282438 37551538 ~ 37552253 (+)
G24228 NA non-coding downstream 302154 37571254 ~ 37576892 (+)
G24231 NA non-coding downstream 313020 37582120 ~ 37585290 (+)
G24237 NA non-coding downstream 343071 37612171 ~ 37612601 (+)
ar ar,LOC108443198 other upstream 800879 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1163082 36043431 ~ 36096726 (+)
trdn NA other upstream 1957461 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3295300 33894336 ~ 33964508 (+)
cebpzos cebpzos other upstream 3479905 33777942 ~ 33779903 (+)
LOC111194342 NA other downstream 320006 37589106 ~ 37714382 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 659255 37928355 ~ 37933989 (+)
G24390 NA other downstream 823874 38092974 ~ 38098324 (+)
G24431 NA other downstream 963493 38232593 ~ 38237041 (+)
G24463 NA other downstream 1090235 38359335 ~ 38382310 (+)

Expression


Co-expression Network