G24317


Basic Information

Item Value
gene id G24317
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37855442 ~ 37857225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32686
GAGCTCCTCCTTCAATCTTTTAACCTCTCCTCTCAGCTCCTCACTGTCTCTCCTCAGTTgctcagggctgtgtgtgtaGCGTGTGTGGTGTGTACTATACTGTGTACTGCTTGTGTCTTTGTGCTTGAGCAGCAGTCTCTGGTTCTCTCTCCggagctcctgcagctcctgctGAGTTCGAGTGATGATGACCCACGGGTCTGGAGTGTGTGTCTGGCCCAGTGTAGGTGGATCTGGAGGACGGGGTTGGGGGTTGGTGGCACAGGTCACAGTGAAGTGAGACGGGGTCAGTAGAGCTGGAGAGGATGGGCGAGTCACAGCTGCTCCCCTCAGAAAGTCCCGCGGCGCGTTCAGCTTCTGTTTCTCCTCCATTCCAACACAAATcctcacacatttacctcaattCGCGCTCTCATTAAACTTCATTTCGTATTTATTTACCCCTCAAAACCCCGCCACCAACGACTTCAAACACAGAGAGGCGGAAGTGTCGCCATAGCGCCCACGACTTCCGCCCATAAGCCAAACCTGctttagaaaaacaaaatatttttt

Function

NR:

description
PREDICTED: galectin-3-binding protein A-like

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32686 True 555 lncRNA 0.52 2 37855442 37857225

Neighbor

gene id symbol gene type direction distance location
LOC103021778 NA coding upstream 217814 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 337575 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 351489 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 365209 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 851667 36983182 ~ 37003775 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 112009 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 127487 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 487164 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 524365 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 559525 38416750 ~ 38427918 (+)
G24271 NA non-coding upstream 91124 37763375 ~ 37764318 (+)
G24253 NA non-coding upstream 131305 37721936 ~ 37724137 (+)
G24242 NA non-coding upstream 204329 37646078 ~ 37651113 (+)
LOC111191733 NA non-coding upstream 235172 37616778 ~ 37620270 (+)
G24237 NA non-coding upstream 242841 37612171 ~ 37612601 (+)
G24324 NA non-coding downstream 6137 37863362 ~ 37864909 (+)
G24321 NA non-coding downstream 8610 37865835 ~ 37868411 (+)
G24330 NA non-coding downstream 27242 37884467 ~ 38006696 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding downstream 28756 37885981 ~ 37888753 (+)
G24341 LOC108415597 non-coding downstream 49052 37906277 ~ 37910523 (+)
LOC111194342 NA other upstream 141060 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1396513 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1758716 36043431 ~ 36096726 (+)
trdn NA other upstream 2553095 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3890934 33894336 ~ 33964508 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 71130 37928355 ~ 37933989 (+)
G24390 NA other downstream 235749 38092974 ~ 38098324 (+)
G24431 NA other downstream 375368 38232593 ~ 38237041 (+)
G24463 NA other downstream 502110 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 502235 38359460 ~ 38379336 (+)

Expression


Co-expression Network