G24321


Basic Information

Item Value
gene id G24321
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37865835 ~ 37868411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32693
CTGAGGGTTTATTTTGTTCCAAAAGGTTTTTTTGTCTCTGACATAAATACAAACAGGAAATGGAACAGTGgacattttctttttgtaaatagaataaaaaacacttgGATTTATATACAGTCCAATATCATATTttacacatagacacacactcactcacactcgtTCAGCAGTTCAACACAGATTAAGAGAGGGGAGTTGAAATTAATTtgtgacacaaaaaaaagaggggGAACCAAACTCATAAATATTCAATTAAAATCCAGAATGCTTTGCAGAAATCTCACAGTTGCCTCAACAACCCTCACCATTGATTACACTTATCCATCACCATTAACATATCCATGATTTTAGCCCAAAAACACAGaccctaaaaaagaaaaagaaaacagaaaagcaaAAGGAAAGAGGTCAGgttaaacaaaaacatcaacacacagggggaaaaaaagttCAGGTAAAAGTTAAGAAAtcagcaaaagaaaaacaaaagaatttAATCCGTTGCTGTTGCTGCAGTCTGTCTGAAATCTTACATTCTAGTGGACCTGCGGCTACggtgaggggaaaaaaaaaaaaatccaacttaaatacaaaaatcagcACCAATTCACATTTACACGCATTTTCTGtgtagaatatataatatataattatatatttaaaaagatatataacaatatattatacCTAATATAACTAATTGCAATCTTTAAACTGGAGTATAGAGAAGTCCATCTGTACGAAACTTTCTGGGAGTTTTTCCATTCAGgcagtaaaacaataaaaacaacgcTCTCACTGCGATCTGACCTATCCTGAGCGAGCACTGCGGCAGGGCTATTTGGTAAATTCTAACAGCATAATTAACCAGTTAAGATGTGATCAGTCATTTACAGTGGGTTTGGTGTAAAATGCTCAGTTTTAGGAATTGctcacagtggtggtgaatagAATCAGAGGCcggattaaaatatatatatgtcttaAGAAAGAAATGTTCTTCGAAGTTCTTGCTTAAGAAGAACGTAAAGATAAATGacgtgacaaaaaaaatatatatatcttcacTTAACGGATATTCTCACTAAAATGCTATTAAATATATTCTACATTTCACATAGCATCACACTTGTCTTAGACTATAGGAGTTAAGAAGGTAATGCTGAGTTCAATTTGCCCAACCAAGTCGAATTTCTGACTCAGAGAGCCTCACCGACCCAAAATTCAGAATCCAAGAACTGAATTAACTGGCATCACTAACAATGCTAGCCTGCAACATTGCTAAAAATTAATATATGGGTATGAAATAAGTGTGACATATTTTGACTAAAGTGATCATCGAAACACTGGTAAATAATTTGTTAAACCAAAGTCTTTAcgttacgttttttttttctttttcaaaaataGTCTTTTGAAATAATGTACAATTTTCTAGATGTTGGAACACAGTTAACTTGTAATGTAACACCCACGTCTGGAATAGGTTAGTTTCTAGAATTCGCATCATAGTACTTTTAGTACTTtctttatccatttttttctccattgCACAGATTTAACTgattggaaaaatgtaaaaatgatttattgtttATAATTATGAAGTTGTAAAAtacataatcaaataaaattgataaaatatgATAACGTGTTTTATGAAAAtcttgacacaatgtaaaaagaaaaatggctgtATGTGTGTTGTACTCATGATGGCCACTGGTCCCATCAACACACCTGAAAAGAAATCACCACTGTAAAGCAAGTTTCTCTACAATGAACCACAGTTTCCCACCAAACCATCACTCTGAATGACTTCatctaaaacactgaattatgcaGAGAGTTGTTACAGACTGGGATGATATTCCCCTTTAATGCTTCTgataagctgctgctgctgctacaggaCTTAAAGAACCATTAGAGACACAGAGAACTCCCACTATGGCCCAATCAACATCTCTCCTGGAGTGAAGAAACTGAAGGAACTCTTTGTACATTAAGGAAGCTGGAGCTCCGGAAAGGCTCACAAAGAGGAaaacgaaagaaaaaaaaaagaacactgtaAGCCACTAAACCCATGTCCCACACAGGAAATCTCCTTtagaaatgttgatttaaatacTCATTTCGAGTAGTTACACTTTTATAAAGTTCTGATTTACAGCTGATTGTCTTTATAAAATAACCTACAAATCAAAAACTCTTCTATaagttacaaaaacaaaaaaagccgTTATTTCTACACTGCCTTTAGAAAAGAGCGCACAGTCCCAGCACGACTCCGGCCTCACTGCCGCCGCTGCTGGGAGGGAGAGAGGTTTCACATTTAACGCGGGGTCTCCTGCGGGGGGCGCCACGTTGCAGATTTAGACTCGCGCCATCACAAACTGAAGAGTTAAAGGAGGGAGTGCAGCAGACTCCGCAGCTGGAGGAACAGGAAGTGTGTGTGCAGGAAGAGAGCAAAATGTGTGAGTCTGCtccagtgtctctctctctctctttctcgttccATTCAGTGCTCGCTCGATCAGAACATAGAC
>TU32694
CTGAGGGTTTATTTTGTTCCAAAAGGTTTTTTTGTCTCTGACATAAATACAAACAGGAAATGGAACAGTGgacattttctttttgtaaatagaataaaaaacacttgGATTTATATACAGTCCAATATCATATTttacacatagacacacactcactcacactcgtTCAGCAGTTCAACACAGATTAAGAGAGGGGAGTTGAAATTAATTtgtgacacaaaaaaaagaggggGAACCAAACTCATAAATATTCAATTAAAATCCAGAATGCTTTGCAGAAATCTCACAGTTGCCTCAACAACCCTCACCATTGATTACACTTATCCATCACCATTAACATATCCATGATTTTAGCCCAAAAACACAGaccctaaaaaagaaaaagaaaacagaaaagcaaAAGGAAAGAGGTCAGgttaaacaaaaacatcaacacacagggggaaaaaaagttCAGGTAAAAGTTAAGAAAtcagcaaaagaaaaacaaaagaatttAATCCGTTGCTGTTGCTGCAGTCTGTCTGAAATCTTACATTCTAGTGGACCTGCGGCTACggtgaggggaaaaaaaaaaaaaatccaacttaaatacaaaaatcagcACCAATTCACATTTACACGCATTTTCTGtgtagaatatataatatataattatatatttaaaaagatatataacaatatattatacCTAATATAACTAATTGCAATCTTTAAACTGGAGTATAGAGAAGTCCATCTGTACGAAACTTTCTGGGAGTTTTTCCATTCAGgcagtaaaacaataaaaacaacgcTCTCACTGCGATCTGACCTATCCTGAGCGAGCACTGCGGCAGGGCTATTTGGTAAATTCTAACAGCATAATTAACCAGTTAAGATGTGATCAGTCATTTACAGTGGGTTTGGTGTAAAATGCTCAGTTTTAGGAATTGctcacagtggtggtgaatagAATCAGAGGCcggattaaaatatatatatgtcttaAGAAAGAAATGTTCTTCGAAGTTCTTGCTTAAGAAGAACGTAAAGATAAATGacgtgacaaaaaaaatatatatatcttcacTTAACGGATATTCTCACTAAAATGCTATTAAATATATTCTACATTTCACATAGCATCACACTTGTCTTAGACTATAGGAGTTAAGAAGGTAATGCTGAGTTCAATTTGCCCAACCAAGTCGAATTTCTGACTCAGAGAGCCTCACCGACCCAAAATTCAGAATCCAAGAACTGAATTAACTGGCATCACTAACAATGCTAGCCTGCAACATTGCTAAAAATTAATATATGGGTATGAAATAAGTGTGACATATTTTGACTAAAGTGATCATCGAAACACTGGTAAATAATTTGTTAAACCAAAGTCTTTAcgttacgttttttttttctttttcaaaaataGTCTTTTGAAATAATGTACAATTTTCTAGATGTTGGAACACAGTTAACTTGTAATGTAACACCCACGTCTGGAATAGGTTAGTTTCTAGAATTCGCATCATAGTACTTTTAGTACTTtctttatccatttttttctccattgCACAGATTTAACTgattggaaaaatgtaaaaatgatttattgtttATAATTATGAAGTTGTAAAAtacataatcaaataaaattgataaaatatgATAACGTGTTTTATGAAAAtcttgacacaatgtaaaaagaaaaatggctgtATGTGTGTTGTACTCATGATGGCCACTGGTCCCATCAACACACCTGAAAAGAAATCACCACTGTAAAGCAAGTTTCTCTACAATGAACCACAGTTTCCCACCAAACCATCACTCTGAATGACTTCatctaaaacactgaattatgcaGAGAGTTGTTACAGACTGGGATGATATTCCCCTTTAATGCTTCTgataagctgctgctgctgctacaggaCTTAAAGAACCATTAGAGACACAGAGAACTCCCACTATGGCCCAATCAACATCTCTCCTGGAGTGAAGAAACTGAAGGAACTCTTTGTACATTAAGGAAGCTGGAGCTCCGGAAAGGCTCACAAAGAGGAaaacgaaagaaaaaaaaaagaacactgtaAGCCACTAAACCCATGTCCCACACAGGAAATCTCCTTtagaaatgttgatttaaatacTCATTTCGAGTAGTTACACTTTTATAAAGTTCTGATTTACAGCTGATTGTCTTTATAAAATAACCTACAAATCAAAAACTCTTCTATaagttacaaaaacaaaaaaagccgTTATTTCTACACTGCCTTTAGAAAAGAGCGCACAGTCCCAGCACGACTCCGGCCTCACTGCCGCCGCTGCTGGGAGGGAGAGAGGTTTCACATTTAACGCGGGGTCTCCTGCGGGGGGCGCCACGTTGCAGATTTAGACTCGCGCCATCACAAACTGAAGAGTTAAAGGAGGGAGTGCAGCAGACTCCGCAGCTGGAGGAACAGGAAGTGTGTGTGCAGGAAGAGAGCAAAATGTGTGAGTCTGCtccagtgtctctctctctctctttctcgttccATTCAGTGCTCGCTCGATCAGAACATAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32693 False 2552 lncRNA 0.51 2 37865835 37868411
TU32694 True 2553 lncRNA 0.36 2 37865835 37868411

Neighbor

gene id symbol gene type direction distance location
LOC103021778 NA coding upstream 228207 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 347968 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 361882 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 375602 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 862060 36983182 ~ 37003775 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 100823 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 116301 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 475978 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 513179 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 548339 38416750 ~ 38427918 (+)
G24324 NA non-coding upstream 926 37863362 ~ 37864909 (+)
G24317 NA non-coding upstream 8610 37855442 ~ 37857225 (+)
G24271 NA non-coding upstream 101517 37763375 ~ 37764318 (+)
G24253 NA non-coding upstream 141698 37721936 ~ 37724137 (+)
G24242 NA non-coding upstream 214722 37646078 ~ 37651113 (+)
G24330 NA non-coding downstream 16056 37884467 ~ 38006696 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding downstream 17570 37885981 ~ 37888753 (+)
G24341 LOC108415597 non-coding downstream 37866 37906277 ~ 37910523 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding downstream 70428 37938839 ~ 37943934 (+)
G24359 NA non-coding downstream 159362 38027773 ~ 38036748 (+)
LOC111194342 NA other upstream 151453 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1406906 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1769109 36043431 ~ 36096726 (+)
trdn NA other upstream 2563488 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3901327 33894336 ~ 33964508 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 59944 37928355 ~ 37933989 (+)
G24390 NA other downstream 224563 38092974 ~ 38098324 (+)
G24431 NA other downstream 364182 38232593 ~ 38237041 (+)
G24463 NA other downstream 490924 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 491049 38359460 ~ 38379336 (+)

Expression


Co-expression Network