G24330


Basic Information

Item Value
gene id G24330
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37884467 ~ 38006696 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32708
CCAGTCTGGCGTTGAGTTCACGGTTGTAATACAAACCCTGCAGAGCCGTTAGACACTTTAACCTCACCTCCCCCTGCtgctcagacagacagagagaaagacaagagaGACAAGaaataaagtgagagagagagattgagagagagagagagagagagagagagagagagagagagagagagagagaaagagaaagggtgatTTGTGCACAATCGTGTTGTCTTTGCTGAGATTCAGTGTTTGCATAGCCAATCAGACAAAGGTTTGTACAGGTGTGATAGAGCGTGTGGGTGACCCCGCCCTCTCAGAGGATGTTGAGGCTCGATTGGCTACTTCGCGCTGAAGCTCCTCCACCCTCTTCTGAAGCTCCGCCCTTTTGGCTAACAGTTCTTTATACCGCT
>TU32709
CCAGTCTGGCGTTGAGTTCACGGTTGTAATACAAACCCTGCAGAGCCGTTAGACACTTTAACCTCACCTCCCCCTGCtgctcagacagacagagagaaagacaagagaGACAAGaaataaagtgagagagagagattgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32708 True 401 lncRNA 0.49 2 37884467 37956414
TU32709 False 215 lncRNA 0.36 3 37884467 38006696

Neighbor

gene id symbol gene type direction distance location
LOC103021778 NA coding upstream 246839 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 366600 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 380514 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 394234 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 880692 36983182 ~ 37003775 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 337693 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 374894 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 410054 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 421953 38428649 ~ 38438064 (+)
lama4 NA coding downstream 519882 38526578 ~ 38577159 (+)
G24321 NA non-coding upstream 16056 37865835 ~ 37868411 (+)
G24324 NA non-coding upstream 19558 37863362 ~ 37864909 (+)
G24317 NA non-coding upstream 27242 37855442 ~ 37857225 (+)
G24271 NA non-coding upstream 120149 37763375 ~ 37764318 (+)
G24253 NA non-coding upstream 160330 37721936 ~ 37724137 (+)
G24359 NA non-coding downstream 21077 38027773 ~ 38036748 (+)
G24432 NA non-coding downstream 236789 38243485 ~ 38246289 (+)
G24437 ufl1 non-coding downstream 249505 38256201 ~ 38259249 (+)
G24474 NA non-coding downstream 433656 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 443299 38449995 ~ 38492705 (+)
LOC111194342 NA other upstream 170085 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1425538 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1787741 36043431 ~ 36096726 (+)
trdn NA other upstream 2582120 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3919959 33894336 ~ 33964508 (+)
G24390 NA other downstream 86278 38092974 ~ 38098324 (+)
G24431 NA other downstream 225897 38232593 ~ 38237041 (+)
G24463 NA other downstream 352639 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 352764 38359460 ~ 38379336 (+)
G24534 NA other downstream 578743 38585439 ~ 38586278 (+)

Expression


Co-expression Network