G24341 (LOC108415597)


Basic Information

Item Value
gene id G24341
gene name LOC108415597
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37906277 ~ 37910523 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32730
ggacgatatatcgtttacaaaaaaatattattgtgacaggcctagttggGTACATAAGTGTATGTgctacaagtgtgtgtgtgtatgtgtctgggTAAATACATTTACCTTCAGCTTGGTGTCCAGCAGCTCTTTGCTGGTAATGAGGTGCGTGGCTTTACACTGGTTCAGTCCGAAAGCTACAGCCTCTTCACCCAGAGTCGCATAGAGAGTTACCaGGGGGTAGTTGCGTCTGAAGCAGGCCTGGGCGGTGATTATCCACTCAGCTCGCGTCTCACAGTAGATGGCAATGTTGCTTTTTGGTGTCTGACCTAATGCAGCCAATCCAGAGCCCAGCAACTCCACTTCATGCTCCACTTCCTCATATGACTTCCAGCTGTACTCTCCCAGCaccagCTTTTGAAAGACCTTTCCATCCGGCTGAGTCTCGTTCTCTTTTGAGATGATGCTCCTCGTCCCCAGACAGGGGGTCTGTTTGAACTTGGCCACAGCATGCCGGAACAGTTTATCCAGTGTGTCTACTCCCTCAAAGTCCTGCCGGACCAGAGCCTCTTCACAGTCCACCGCCCGGTACGGACCCTCCGGATGCCCGGACACACTGCGAGCCCTGACACACTCCGACAtcTGTATGGGCTGTCGATAGGTGATTATTATTGGTGGAGTTAacctctttattttccttcctCCACGATACAGATACGAACGGACGAAACTGCGAAAAAACCCTAATTTCAGATTCGCCATCAACCCAGACCACAACCGGTAACTTATATAGAGAGTCTACCCACTTCCTATCTCCGCCGTTATAACTGCAGaccactagagggagc
>TU32731
ggacgatatatcgtttacaaaaaaatattattgtgacaggcctagttggGTACATAAGTGTATGTgctacaagtgtgtgtgtgtatgtgtctgggTAAATACATTTACCTTCAGCTTGGTGTCCAGCAGCTCTTTGCTGGTAATGAGGTGCGTGGCTTTACACTGGTTCAGTCCGAAAGCTACAGCCTCTTCACCCAGAGTCGCATAGAGAGTTACCaGGGGGTAGTTGCGTCTGAAGCAGGCCTGGGCGGTGATTATCCACTCAGCTCGCGTCTCACAGTAGATGGCAATGTTGCTTTTTGGTGTCTGACCTAATGCAGCCAATCCAGAGCCCAGCAACTCCACTTCATGCTCCACTTCCTCATATGACTTCCAGCTGTACTCTCCCAGCaccagCTTTTGAAAGACCTTTCCATCCGGCTGAGTCTCGTTCTCTTTTGAGATGATGCTCCTCGTCCCCAGACAGGGGGTCTGTTTGAACTTGGCCACAGCATGCCGGAACAGTTTATCCAGTGTGTCTACTCCCTCAAAGTCCTGCCGGACCAGAGCCTCTTCACAGTCCACCGCCCGGTACGGACCCTCCGGATGCCCGGACACACTGCGAGCCCTGACACACTCCGACAtcct

Function

NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32730 True 830 lncRNA 0.39 4 37906277 37910523
TU32731 False 627 lncRNA 0.47 3 37906277 37908400

Neighbor

gene id symbol gene type direction distance location
LOC103021778 NA coding upstream 268649 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 388410 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 402324 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 416044 37438083 ~ 37490233 (+)
c3hxorf56 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 coding upstream 902502 36983182 ~ 37003775 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding downstream 58711 37969234 ~ 37975259 (+)
LOC103045011 LOC103045011,LOC108414810 coding downstream 74189 37984712 ~ 37988933 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 433866 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 471067 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 506227 38416750 ~ 38427918 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding upstream 17524 37885981 ~ 37888753 (+)
G24321 NA non-coding upstream 37866 37865835 ~ 37868411 (+)
G24324 NA non-coding upstream 41368 37863362 ~ 37864909 (+)
G24317 NA non-coding upstream 49052 37855442 ~ 37857225 (+)
G24271 NA non-coding upstream 141959 37763375 ~ 37764318 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding downstream 28316 37938839 ~ 37943934 (+)
G24359 NA non-coding downstream 117250 38027773 ~ 38036748 (+)
G24432 NA non-coding downstream 332962 38243485 ~ 38246289 (+)
G24437 ufl1 non-coding downstream 345678 38256201 ~ 38259249 (+)
G24474 NA non-coding downstream 529829 38440352 ~ 38440660 (+)
LOC111194342 NA other upstream 191895 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1447348 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1809551 36043431 ~ 36096726 (+)
trdn NA other upstream 2603930 35226798 ~ 35302347 (+)
cnksr3 cnksr3,LOC108426324,LOC108257645,LOC107560196 other upstream 3941769 33894336 ~ 33964508 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other downstream 17832 37928355 ~ 37933989 (+)
G24390 NA other downstream 182451 38092974 ~ 38098324 (+)
G24431 NA other downstream 322070 38232593 ~ 38237041 (+)
G24463 NA other downstream 448812 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 448937 38359460 ~ 38379336 (+)

Expression


Co-expression Network