G24359


Basic Information

Item Value
gene id G24359
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38027773 ~ 38036748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32760
cagaCGCTTACTTCATAAaagcagtttatttttacatgagTATTATCAGTTCTATTATACAGTCAGCccttatttaaatattcaaatcaGCTGGAGCAGAAACCAGAGAAGTCAAACAGtgcagtgtacacacacactctctcttacactcacctcacacacacacaaaaacacactatcTCTcagactttctctctctctcacacacacacacacacacacacacacacacacacacacacaatattcaTGTTTTATGATTTAAAGAAGAAATGATCCagtcagaataaaataaagatttacaTATTAGAGAAATATACAGAGAAAAGGTCATGACCAGCAGAGGGAGCTGCATCACACAAGGCTCAAGGTGTTCAGCTGTTATTGATCTGTCTGTGGAAGGTCATGTAACTGCTGTATGGTGGCCTGTGAGGCTCAAAATCAGTGTAATCATTAACACAAATAAcctaccacacacatacacacccacacacacacacacacacacttacacacaacagagataaaaactaaaaccagataCAGAAACTAACATCAAATTTCAAACTGTGATAAACACACCTGAGAATCAAAGTGCTTAAAACCACACctgaaggagtgtgtgtgtctgtgtgtgcgtgttcgTGTTTTTTGAGTTAGTGTACTTGTTGATGAATATTTTATCTTGTGATGGTTATGCAAACACCTCATACTTccaaacagaaagaaaatgtctgtttgtgtgtgtgtatgtgctctCGAATTTTCTAGCTCCGGGCATCTCTTTCGAAGGCAGGGTTGTCATAGTGAGGCTGTGTCTCCACACAAACCACCTCCAAACCTGTGGACCAATCAAACAACAGCAcacttttaaaatcaacaaaCCACTTACCACTCAAAAATTCACCACACACATTCAGAAAACAGTACTCACAAATACACCCTTTCCTCCCagtactcacactcacacacacactacccagACACATACAGTTTCTTACCATTGTGTGCTTCTCCCACTGAGTTTATAGATTCATATCCTGAAGACACTGTGTCGCTTTGTGTGTTTGAAACACTGTCAGTAGTAAGTGTATAAGAGACACTGTCAatatgtgtgtcagtgtgtggatgagagTTCTCAGTGCTGCGAGGCAGTAAATCAGGTGGAGACTCCTCTTCCaactagagaaagagagagagagagagagagaaaaaaagaaaaagaaagataatagaatgtgttagtgtgtgtatgaagtttgaaaatatacattttaagaaaATTTTGTTAACTTTCTTGTTAGCTTATGCTAATAATGTTACTTTTTAGCTATACATATGGACTAACATcttgatttaaaaacattttacattttttatttaaattcatgTTTGTGTTTCGATGTGGTGTGAGTCTTTTCTGTGGATATGTGTAAACAAATATTTGAgggaaatatttaaaatgacaagCAAATATCTTGAGTTATACTATgtatagccctatctggacaggattagtttctc
>TU32761
cagaCGCTTACTTCATAAaagcagtttatttttacatgagTATTATCAGTTCTATTATACAGTCAGCccttatttaaatattcaaatcaGCTGGAGCAGAAACCAGAGAAGTCAAACAGtgcagtgtacacacacactctctcttacactcacctcacacacacacaaaaacacactatcTCTcagactttctctctctctcacacacacacacacacacaatattcaTGTTTTATGATTTAAAGAAGAAATGATCCagtcagaataaaataaagatttacaTATTAGAGAAATATACAGAGAAAAGGTCATGACCAGCAGAGGGAGCTGCATCACACAAGGCTCAAGGTGTTCAGCTGTTATTGATCTGTCTGTGGAAGGTCATGTAACTGCTGTATGGTGGCCTGTGAGGCTCAAAATCAGTGTAATCATTAACACAAATAAcctaccacacacatacacacccacacacacacacacacacacttacacacaacagagataaaaactaaaaccagataCAGAAACTAACATCAAATTTCAAACTGTGATAAACACACCTGAGAATCAAAGTGCTTAAAACCACACctgaaggagtgtgtgtgtctgtgtgtgcgtgttcgTGTTTTTTGAGTTAGTGTACTTGTTGATGAATATTTTATCTTGTGATGGTTATGCAAACACCTCATACTTccaaacagaaagaaaatgtctgtttgtgtgtgtgtatgtgctctCGAATTTTCTAGCTCCGGGCATCTCTTTCGAAGGCAGGGTTGTCATAGTGAGGCTGTGTCTCCACACAAACCACCTCCAAACCTGTGGACCAATCAAACAACAGCAcacttttaaaatcaacaaaCCACTTACCACTCAAAAATTCACCACACACATTCAGAAAACAGTACTCACAAATACACCCTTTCCTCCCagtactcacactcacacacacactacccagACACATACAGTTTCTTACCATTGTGTGCTTCTCCCACTGAGTTTATAGATTCATATCCTGAAGACACTGTGTCGCTTTGTGTGTTTGAAACACTGTCAGTAGTAAGTGTATAAGAGACACTGTCAatatgtgtgtcagtgtgtggatgagagTTCTCAGTGCTGCGAGGCAGTAAATCAGGTGGAGACTCCTCTTCCaaCTCCACTCCCAGGGCTTTAAGGACGTCACATTTGCACATTGGACAGGTCCTGTGCTCCAACAGCCATGGCTCCACACATACCTTATGGAAGAAATGaCTGCAAGTGAGGACTGACAGAACGTCTCCTGGTTTGTATGTTTCAATACACACTGCACAGGAATCGGCATCAGGCCCAgtctcCTTATCTCCGTGTTTGAGTGTGCGGACCTGGAGCTGACCAATTGCCTTCTTAGCTTTTGCTTTCATCTGTCTctgtctGCGGTTCTGCACATTGCTTCTGTAGAGCCTCCGTGCTGTGTAGTAGATAAAGTATGCAACTGTTGCTGTGGTGATGACGATGAAGGAGACAGAGATGAGGAAGATGGAGTAGTGACTCATCATCGGCTCGTAAACCCGCCCCACCTCGATTGCCATTGTAACGGGCACACCCTTGTGCAGCAGCTCTGCCAGCACAGTCCCGCCCACATTACCCATCATCACTGCTACAATACTGGTacctgcacacacaaacaCAAAACCTTATATAAAAATATCCTTTTTCATAAACAGTCCTGTTTATAACTACAAAGCATAACAGCCGACAAGGAGACAAAACTCGACttatgtaaaactactgttctattttattttttatatgctg
>TU32762
cagaCGCTTACTTCATAAaagcagtttatttttacatgagTATTATCAGTTCTATTATACAGTCAGCccttatttaaatattcaaatcaGCTGGAGCAGAAACCAGAGAAGTCAAACAGtgcagtgtacacacacactctctcttacactcacctcacacacacacaaaaacacactatcTCTcagactttctctctctctcacacacacacacacacacacacacacaatattcaTGTTTTATGATTTAAAGAAGAAATGATCCagtcagaataaaataaagatttacaTATTAGAGAAATATACAGAGAAAAGGTCATGACCAGCAGAGGGAGCTGCATCACACAAGGCTCAAGGTGTTCAGCTGTTATTGATCTGTCTGTGGAAGGTCATGTAACTGCTGTATGGTGGCCTGTGAGGCTCAAAATCAGTGTAATCATTAACACAAATAAcctaccacacacatacacacccacacacacacacacacacacttacacacaacagagataaaaactaaaaccagataCAGAAACTAACATCAAATTTCAAACTGTGATAAACACACCTGAGAATCAAAGTGCTTAAAACCACACctgaaggagtgtgtgtgtctgtgtgtgcgtgttcgTGTTTTTTGAGTTAGTGTACTTGTTGATGAATATTTTATCTTGTGATGGTTATGCAAACACCTCATACTTccaaacagaaagaaaatgtctgtttgtgtgtgtgtatgtgctctCGAATTTTCTAGCTCCGGGCATCTCTTTCGAAGGCAGGGTTGTCATAGTGAGGCTGTGTCTCCACACAAACCACCTCCAAACCTGTGGACCAATCAAACAACAGCAcacttttaaaatcaacaaaCCACTTACCACTCAAAAATTCACCACACACATTCAGAAAACAGTACTCACAAATACACCCTTTCCTCCCagtactcacactcacacacacactacccagACACATACAGTTTCTTACCATTGTGTGCTTCTCCCACTGAGTTTATAGATTCATATCCTGAAGACACTGTGTCGCTTTGTGTGTTTGAAACACTGTCAGTAGTAAGTGTATAAGAGACACTGTCAatatgtgtgtcagtgtgtggatgagagTTCTCAGTGCTGCGAGGCAGTAAATCAGGTGGAGACTCCTCTTCCaaCTCCACTCCCAGGGCTTTAAGGACGTCACATTTGCACATTGGACAGGTCCTGTGCTCCAACAGCCATGGCTCCACACATACCTTATGGAAGAAATGaCTGCAAGTGAGGACTGACAGAACGTCTCCTGGTTTGTATGTTTCAATACACACTGCACAGGAATCGGCATCAGGCCCAgtctcCTTATCTCCGTGTTTGAGTGTGCGGACCTGGAGCTGACCAATTGCCTTCTTAGCTTTTGCTTTCATCTGTCTctgtctGCGGTTCTGCACATTGCTTCTGTAGAGCCTCCGTGCTGTGTAGTAGATAAAGTATGCAACTGTTGCTGTGGTGATGACGATGAAGGAGACAGAGATGAGGAAGATGGAGTAGTGACTCATCATCGGCTCGTAAACCCGCCCCACCTCGATTGCCATTGTAACGGGCACACCCTTGTGCAGCAGCTCTGCCAGCACAGTCCCGCCCACATTACCCATCATCACTGCTACAATACTGGTacctgcacacacaaacaCAAAACCTTATATAAAAATATCCTTTTTCATAAACAGTCCTGTTTATAACTACAAAGCATAACAGCCGACAAGGAGACAAAACTCGACttatgtaaaactactgttctattttattttttatatgctg

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU32760 False 1524 lncRNA 0.37 2 38027773 38029380
TU32761 False 1800 lncRNA 0.55 7 38027773 38036748
TU32762 True 1808 lncRNA 0.42 7 38027773 38036748

Neighbor

gene id symbol gene type direction distance location
LOC103045011 LOC103045011,LOC108414810 coding upstream 38840 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 52514 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 390145 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 509906 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 523820 37497889 ~ 37503953 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 307641 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 344842 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 380002 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 391901 38428649 ~ 38438064 (+)
lama4 NA coding downstream 489830 38526578 ~ 38577159 (+)
G24330 NA non-coding upstream 21077 37884467 ~ 38006696 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 83839 37938839 ~ 37943934 (+)
G24341 LOC108415597 non-coding upstream 117250 37906277 ~ 37910523 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding upstream 139020 37885981 ~ 37888753 (+)
G24321 NA non-coding upstream 159362 37865835 ~ 37868411 (+)
G24432 NA non-coding downstream 206737 38243485 ~ 38246289 (+)
G24437 ufl1 non-coding downstream 219453 38256201 ~ 38259249 (+)
G24474 NA non-coding downstream 403604 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 413247 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 466479 38503227 ~ 38503518 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 93784 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 313391 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1568844 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1931047 36043431 ~ 36096726 (+)
trdn NA other upstream 2725426 35226798 ~ 35302347 (+)
G24390 NA other downstream 56226 38092974 ~ 38098324 (+)
G24431 NA other downstream 195845 38232593 ~ 38237041 (+)
G24463 NA other downstream 322587 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 322712 38359460 ~ 38379336 (+)
G24534 NA other downstream 548691 38585439 ~ 38586278 (+)

Expression


Co-expression Network