G57789


Basic Information

Item Value
gene id G57789
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11786904 ~ 11787326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65822
CAAAGGTGGGAGCATTTGAGACAGATTAGGAATCAGCATCTTTTTCCTCAAAGATATCAGCAAGGGCACCAGGAATGTGATTAGTTTCAGGTAGGCGAGGTCTCTGGAGACTTCTGCATTCCTCTCAAGGTGCTTTCTCACCAGAATAATGTGATCCGACAGCCTTTTCTGTAGCCTCTGGTAGGTGGCCAGATCAATGCTGTCCTCAGTGAGTCGGACCACATTAGACAGGCTATGAGACCCCTCAAACACAAAGAGATTTTGGTGCTGGCGGACAGAGGTCAGGTAGGCGCTCAACTTGATCAGGATGTTCTCTGAGTATTGTGAGAAGAGATTCTCCTCGTCTGCGCTGTTGGGTTCATAGGTTGGGTCTACATCAATGTTCTCCTTATAAATGTCCTGATAACATGGATCATCTGAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65822 True 423 lncRNA 0.47 1 11786904 11787326

Neighbor

gene id symbol gene type direction distance location
CI01000009_11769442_11773619 OSGEPL1 coding upstream 13285 11769442 ~ 11773619 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 coding upstream 20573 11761606 ~ 11766944 (+)
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding upstream 72210 11711160 ~ 11714694 (+)
CI01000009_11669960_11702667 HIBCH coding upstream 83365 11669960 ~ 11703539 (+)
CI01000009_11493236_11526914 VWC2L coding upstream 259990 11493236 ~ 11526914 (+)
CI01000009_11789703_11791511 NA coding downstream 2377 11789703 ~ 11791736 (+)
CI01000009_11803818_11808988 SLC40A1 coding downstream 15058 11802384 ~ 11809235 (+)
CI01000009_11835682_11873220 STAT4 coding downstream 48356 11835682 ~ 11873330 (+)
CI01000009_11875722_11882183 STAT1B, STAT1 coding downstream 88160 11875486 ~ 11882921 (+)
CI01000009_11892226_11892558 NA coding downstream 104900 11892226 ~ 11892677 (+)
G57787 NA non-coding upstream 6337 11780329 ~ 11780567 (+)
G57786 NA non-coding upstream 8799 11777839 ~ 11778105 (+)
G57772 NA non-coding upstream 29241 11746377 ~ 11757663 (+)
G57665 NA non-coding upstream 120579 11664022 ~ 11666325 (+)
G57654 NA non-coding upstream 131540 11620460 ~ 11655364 (+)
G57790 NA non-coding downstream 250 11787576 ~ 11787784 (+)
G57719 NA non-coding downstream 27743 11815069 ~ 11822531 (+)
G57792 NA non-coding downstream 47412 11834738 ~ 11834960 (+)
G57813 NA non-coding downstream 151052 11938378 ~ 11938639 (+)
G57724 NA non-coding downstream 380205 12167531 ~ 12168221 (+)
CI01000009_09853929_09854476 SAP18 other upstream 1930317 9853929 ~ 9856587 (+)
G56100 NA other upstream 2656618 9129300 ~ 9130286 (+)
G53651 NA other upstream 5538512 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 5854103 5931718 ~ 5943899 (+)
G57811 NA other downstream 146616 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 645232 12432538 ~ 12436017 (+)
G57682 NA other downstream 1038143 12825469 ~ 12892339 (+)
G57691 NA other downstream 1119118 12906444 ~ 12918465 (+)
G57701 NA other downstream 1219317 13006643 ~ 13023138 (+)

Expression


Co-expression Network