G24432


Basic Information

Item Value
gene id G24432
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38243485 ~ 38246289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32865
tgtccatatttgcatattatttttaatcattttaagcagggctggtatattttattattacacagCAAAGCATTTAAGCtgttattgtaataataaatgtaaaaatgttaactATTTTAGAGTAGCCTAGAATATCTGGCATGTGTGAccttcatttatattttttgtaatttgcaTACGAATAAAGGAGCATcaatttataacatttttttaagatatgtacagtatttacagcatctttactgactgattttttttaagcgaAACAGCAGAGTGGTATAGAATACCATAGTCTGGCAATCTCAGTGTGTGATAATGTACACATCAGGAAGTTGTTCAGTTGAGCTGTACACATTTATATCAAAACGATAACACATCgactaaaattaatatattgtgacataagttttgtcatatcgtccagcactaaatTGTTAAGCTGGAAATGGCACTATGTTTCTAATTACAGTGTGTTGACTGGTTTTGTTTTGGCacataaagtgtttgagaagTTGTCTGGAAGTGGAAAGGACTAATGCATTTTGTTTCATTCAGGTTATAATTTTGAAAACAAATGTTGTGCTCTAGCAAATCAGTACTGCAGacccttttttattaaattaaattttatcaaacaaaatgaaactgaCTAGACAATATCTTGGGTTAATATTTtcagcaattaaataaaagtcaaagcaaatgttaaaaaaaacatcactgctTCTCACATTAGCTGTAACTGTCAGAATTTACTATGTAATAGAATATTTAATACGGAATAGGTATACAAAACAGTGACATTCCATCATATGATCTCTGATTTGATTTTGTCTATGATGTGTCGAAACATTCTCAGAAAGTTCACAAATGTAATACATGTAATACGTACGTATTACAGTTTTTGTCTAATTAAAACAtacctgaacaggtaagctcaATATCCATATTATGATTACAGCTGTGTTCACCCCACCCTAATGATCCACAGTGTTTCAGTGTAGACTCTGATCCAGTACACTTCACATGACTCATCCAGATCGGTGCAGATCCTGGAACAGCTGCATCAGTCCTAAACGGCTCTCCACAGCCCAACTCTTTACACATGACAAAACCCGCTATGAAATTTGCACCAGCACCACAAATTGTTCCCCACTGTCCTCTGTGAAAAACCTCTGCTCTTCCAGCACAGCGACTGCCACCATCCGCCAACCTCACACTGTCTGTGTAAGAGAAaataagaacaagaaaaatttACctctccatgaagaacctccactctcccagagcAGCGAGAGCCATTAACCAGCAGGACTCCTAAAAATTACCATGAAAAAAGAAAGCTTATTTATCAGTAATGATAAATGATTAAGCATGATGATGCTAAATATTGCACAATGAATGATTCATAAATGCATTGGAAAAAACTAAAGAGAGTATAAGGATTCAAAATAAGTTCAGTAAAGctatgaattacattaaacaaattaatatggATCAGCAAAATTatgaaatcagtaaaaaaaaaaaaaaaaaaaaaacagtaaattaaTTGTTGGTTGAGAATTCCAGTGTACAGCACAGTTTGGTGATTGCTCAGTTTAAACATACCAATTTACCTTGGCAATCAACAAGGATTTAGGGTgggttaaaaagaaaaatcatatgTGCTGTACACTTTGCCTACATGGCAGATAATGTACAGTCcctgtttacagtgttttacctgAACAGATAACTCCAGCATAGGACACCCCTAATCAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32865 True 1767 lncRNA 0.34 3 38243485 38246289

Neighbor

gene id symbol gene type direction distance location
LOC103045011 LOC103045011,LOC108414810 coding upstream 254552 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 268226 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 605857 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 725618 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 739532 37497889 ~ 37503953 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 98100 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 135301 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 170461 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 182360 38428649 ~ 38438064 (+)
lama4 NA coding downstream 280289 38526578 ~ 38577159 (+)
G24359 NA non-coding upstream 206737 38027773 ~ 38036748 (+)
G24330 NA non-coding upstream 236789 37884467 ~ 38006696 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 299551 37938839 ~ 37943934 (+)
G24341 LOC108415597 non-coding upstream 332962 37906277 ~ 37910523 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding upstream 354732 37885981 ~ 37888753 (+)
G24437 ufl1 non-coding downstream 9912 38256201 ~ 38259249 (+)
G24474 NA non-coding downstream 194063 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 203706 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 256938 38503227 ~ 38503518 (+)
G24531 NA non-coding downstream 335338 38581627 ~ 38582793 (+)
G24431 NA other upstream 6444 38232593 ~ 38237041 (+)
G24390 NA other upstream 145161 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 309496 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 529103 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1784556 36249824 ~ 36458929 (+)
G24463 NA other downstream 113046 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 113171 38359460 ~ 38379336 (+)
G24534 NA other downstream 339150 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 421220 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 679407 38925696 ~ 38926982 (+)

Expression


Co-expression Network