G24437 (ufl1)


Basic Information

Item Value
gene id G24437
gene name ufl1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38256201 ~ 38259249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32876
ttttccagagctgtatgtgaatAACTGTAAATCGAACATAAACCAAAGAGAGCTGTAAATCAGGCAATCAGAGTAGAGCCATTAAATTCAAAACAGCCTGTTTTACTCAGTTTATTATTAAGTCAAATCACATGGTTGTTTTTGGAAATatgaaaatcagatttaagctCATTCGTTAATGCAGTAAATGATTAATGATCAATAGTTTAAAGTGTACCTGTAAGTCGACCCAGGTCTGTGAACTAATGGCCTCCTCCACCGACGCCTCCAACTGGGCTATGATCTCTGGCCCGACACACGCAGATCTCAAAAACAGCAGCTTACTGGATTTTAAACGCTTCTTAATGTAGCTCACAGGATCAGGAATACCCAGTCGGGTCAGCGCCTCAAACTCCAGGTATCCGTTCTGTTTGAGGAAGGAGTCCACCCAGGCGTTTTGTGTTCTGGAgtaaatttcaggaatataaACAGCTTTATCCTGCCGACCCCCAACCACTGTACCCTTCAACCGGCCGGAATTCACCAACTCCTCCAGAACCgAGTATAAGAGATTTTCATGGaacccaaaaacactgatcagaGCGCTGACTGGTGTAggcctGGTGAGGGCACTGAAGACCCCCCGTATTCGGGCTGTTTGTCGGCAAATGAAAGCCTGAGTGAAAATCACACCTCGATTAAACTCATCCACCTGTCCATCAATTATTCGGCCAACTCGCCCACACAACTCCTGTGTGAGGAAATCTCCGGGCAGGTCGTAGGTTTTGCAGAGCTCCGCCGTGTTCACCTGTCCCACTTCCTGTAGCTTATCATTCACTTCCTCTGCAAGCTGATCCAGATACTTCTCATCAATCAGCTGACCCAAGATCAAGTGTGTTCCTCTGTCCTGTTTTGAAACCTCAATGGCTCGGCTCTCCACATGCACCAGGTCAACATTAATGAGCTTCTGGAGCTCCACAATGTTGATACGtcct

Function

symbol description
ufl1 Predicted to enable UFM1 ligase activity. Predicted to be involved in several processes, including cellular protein modification process; hemopoiesis; and regulation of cellular catabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in endoplasmic reticulum; nucleus; and site of double-strand break. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human UFL1 (UFM1 specific ligase 1).

NR:

description
PREDICTED: E3 UFM1-protein ligase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32876 True 974 lncRNA 0.46 7 38256201 38259249

Neighbor

gene id symbol gene type direction distance location
LOC103045011 LOC103045011,LOC108414810 coding upstream 267268 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 280942 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 618573 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 738334 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 752248 37497889 ~ 37503953 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 85140 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 122341 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 157501 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 169400 38428649 ~ 38438064 (+)
lama4 NA coding downstream 267329 38526578 ~ 38577159 (+)
G24432 NA non-coding upstream 9912 38243485 ~ 38246289 (+)
G24359 NA non-coding upstream 219453 38027773 ~ 38036748 (+)
G24330 NA non-coding upstream 249505 37884467 ~ 38006696 (+)
G24474 NA non-coding downstream 181103 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 190746 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 243978 38503227 ~ 38503518 (+)
G24531 NA non-coding downstream 322378 38581627 ~ 38582793 (+)
G24535 NA non-coding downstream 331692 38590941 ~ 38592527 (+)
G24431 NA other upstream 19160 38232593 ~ 38237041 (+)
G24390 NA other upstream 157877 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 322212 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 541819 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1797272 36249824 ~ 36458929 (+)
G24463 NA other downstream 100086 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 100211 38359460 ~ 38379336 (+)
G24534 NA other downstream 326190 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 408260 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 666447 38925696 ~ 38926982 (+)

Expression


Co-expression Network