LOC111191729 (LOC108416192)


Basic Information

Item Value
gene id LOC111191729
gene name LOC108416192
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38359460 ~ 38379336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32917
ACGAGATCATGACCTTCGGACAGATGCCTTATCCAACTCTCACTAATGCTCAGGTTGTTGTGAAGCTGGGTACTGGCTATCGGATGTCGTGTCCACCACTGTGTCCAaaaatgatatatgatataatggTTGAGTGCTGGAAGGAAACGCCCGCTGAGCGGCCCACCTTCGAAACTCTGCAGTGGAAACTAGAGGAATACTTCGACCTGGATGTCAGTTCATATGATGACGCTAACCGATATTGACCAATGCA
>XM_022667439.1
ACTACATTTGTGGTTAAATTTGTACTGGTTGAACTGGTCAGGGACTGGTCAGTGTGAGCTCCTTCAGCTTCATGTAGTGTGTAGAACACAGAGCATGGTGTGTGCTGGACTCTGCCGCTGTGCAGGTGTGTGATTTGGAGACTGAAGGAGTAGTTGTAGGTGTAGTTGGTGTATTTGAGTAGTTGTAGTTTTGGTGGTGTAGTTTCTGCAGGATGGGGACTGTGAGCGAGCGCATCGTGAGCTGCTGTACCTCCACCTTCCCATGTCTGCGGCAGAAACAGCCTGAGGAGCCGCCTGTGAAACAAAATCCTAAAAAAGAAGACATTGTGGTCTTCCAAAACAAGCATGCTTTAGAACAGATGATCTCGGAGCATCCCCAGCCTGTGTCCCAGTCTAAAACCGTGTCTCAGTTCGTGGCTCTGTTTGATTACTCGAAGCGCACAGCGGAGGACCTGAGCTTCCACACAGGAGATAAACTCCAGCTGCTGCAGAAGTACGACACAGACTGGTGGTTCGTTAAAGCTCTGACCGGCGTCTCCGCCAACAAGGAGGGATACGTTCCAGCCAACTATATAGCCACTGTGGAGAGTCTGGACGCAGAACCGTGGTACTTTGCTGATACAAAGCGCTTGGATGCGGAGAAGCTACTGCAGGCAGAAGGAAATAAACATGGAGCGTTTCTCATCAGACACTGTGAAAGTCAGGCTGGAGAACTGTCCCTGTCAGTGCTTGATGGGGGTAATGTGAAACACTACAAGATCAGGCGGGAGGATAATGGTCACTACTATATATCAAAGAGCCGTCATTTCCCCACACTGAAGGAGCTGGTGGAGCACTACAGCAAGCAGGAGGATGGACTCTGCGTTCGGCTCAGACAGCCCTGCAAGAAGGCTGAAGCTCCACAGACGCACGGTCTGTCTTACAGCACAGTGGACCAATGGGAAATTCCCCGCAGTTCCATCCGACTGTTGCGGAAACTCGGTGCTGGAAAGTTTGGAGAGGTTCATGAGGGTCTGTGGAATAACACAACGTCTGTTGCTGTGAAAACTTTAAAACCAGACACTGTGGACTCTGAGGACTTCCTGCGTGAAGCTCAGATCATGAAGAAGCTCCGACACCCCAAGCTGATCCAACTGTATGCAGTGTGTACTCTGGGGGCACCGATCTACATCATCACTGAGTTAATGAGCAATGGCAGCCTGCTGGAGTACTTACAAAAAGACAGAGGGGCTCGTTTGCGTGTTCCTGATCAGATAGAGATGGCCGCCCAGGTGGCAGCAGGTATGGCTTACCTGGAGCTGCAGAATTACATCCATAGAGATCTGGCAGCCCGGAATGTTCTGGTTGGAGAGAACAACGTGTGCAAAGTGGCCGATTTTGGTCTGGCCCGAGTGTTTAATAGAGAGAATAACAACTGTTATAATGAAGATGAGGAAAACATATACGAAGCAACAGAGGGTACTTATTTTCTGGTGAAGTGGACGGCTCCCGAGGCCATTCGGGAGAACAAATTCACCATCAAATCTGATGTGTTGTCATTCGGCATCCTGCTGCACGAGATCATGACCTTCGGACAGATGCCTTATCCAACTCTCACTAATGCTCAGGTTGTTGTGAAGCTGGGTACTGGCTATCGGATGTCGTGTCCACCACTGTGTCCAaaaatgatatatgatataatggTTGAGTGCTGGAAGGAAACGCCCGCTGAGCGGCCCACCTTCGAAACTCTGCAGTGGAAACTAGAGGAATACTTCGACCTGGATGTCAGTTCATATGATGACGCTAACCGATATTGACCAATGCAGCACAGCAACAGCACTCACAAAAACTGTCTACTGTTTCTACTGTTTTCCGGCGGTATA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
TU32917 False 253 lncRNA 0.47 2 38378936 38379278
XM_022667439.1 True 1865 mRNA 0.49 8 38359460 38379336

Neighbor

gene id symbol gene type direction distance location
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding upstream 9136 38344389 ~ 38350324 (+)
LOC103045011 LOC103045011,LOC108414810 coding upstream 370527 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 384201 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 721832 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 841593 37510934 ~ 37517867 (+)
LOC103029663 NA coding downstream 2254 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 37414 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 49313 38428649 ~ 38438064 (+)
lama4 NA coding downstream 147242 38526578 ~ 38577159 (+)
tube1 tube1 coding downstream 200627 38579963 ~ 38606640 (+)
G24437 ufl1 non-coding upstream 100211 38256201 ~ 38259249 (+)
G24432 NA non-coding upstream 113171 38243485 ~ 38246289 (+)
G24359 NA non-coding upstream 322712 38027773 ~ 38036748 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 415526 37938839 ~ 37943934 (+)
G24341 LOC108415597 non-coding upstream 448937 37906277 ~ 37910523 (+)
G24474 NA non-coding downstream 61016 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 70659 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 123891 38503227 ~ 38503518 (+)
G24531 NA non-coding downstream 202291 38581627 ~ 38582793 (+)
G24535 NA non-coding downstream 211605 38590941 ~ 38592527 (+)
G24431 NA other upstream 122419 38232593 ~ 38237041 (+)
G24390 NA other upstream 261136 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 425471 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 645078 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1900531 36249824 ~ 36458929 (+)
G24534 NA other downstream 206103 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 288173 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 546360 38925696 ~ 38926982 (+)
G24583 NA other downstream 560021 38939357 ~ 38947222 (+)
G24719 NA other downstream 665834 39045170 ~ 39045781 (+)

Expression


Co-expression Network