ufl1 (ufl1)


Basic Information

Item Value
gene id ufl1
gene name ufl1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38246771 ~ 38263674 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU32955
ATTTCGAATTGCTTGCTTTAATGTCAAGAGTGTGTATAATATCCTATTTTCTGTCTGTTGCTTTAGACTTGTGCTGCAGAATATCctctaaaaaaagacaaattaattTTCCTgtgactgtaaaaaaataagttatgcAATCTGTAAACCTGATGtaattttgctgttttaaaggaCGTATCAACATTGTGGAGCTCCAGAAGCTCATTAATGTTGACCTGGTGCATGTGGAGAGCCGAGCCATTGAGGTTTCAAAACAGGACAGAGGAACACACTTGATCTTGGGTCAGCTGATTGATGAGAAGTATCTGGATCAGCTTGCAGAGGAAGTGAATGATAAGCTACAGGAAGTGGGACAGGTGAACACGGCGGAGCTCTGCAAAACCTACGACCTGCCCGGAGATTTCCTCACACAGGAGTTGTGTGGGCGAGTTGGCCGAATAATTGATGGACAGGTGGATGAGTTTAATCGAGGTGTGATTTTCACTCAGGCTTTCATTTGCCGACAAACAGCCCGAATACGGGGGGTCTTCAGTGCCCTCACCaggccTACACCAGTCAGCGCtctgatcagtgtttttgggttCCATGAAAATCTCTTATACTcGGTTCTGGAGGAGTTGGTGAATTCCGGCCGGTTGAAGGGTACAGTGGTTGGGGGTCGGCAGGATAAAGCTGTttatattcctgaaatttacTCCAGAACACAAAACGCCTGGGTGGACTCCTTCCTCAAACAGAACGGATACCTGGAGTTTGAGGCGCTGACCCGACTGGGTATTCCTGATCCTGTGAGCTACATTAAGAAGCGTTTAAAATCCAGTAAGCTGCTGTTTTTGAGATCTGCGTGTGTCGGGCCAGAGATCATAGCCCAGTTGGAGGCGTCGGTGGAGGAGGCCATTAGTTCACAGACCTGGGTCGACTTACAGTTattcacatacagctctggaaaaaggagaccacttcagtttctgaatcagtttctctgatttcgctgTTTAtagtagatgtttgagtaaaatgaacataattgttttattctataaa
>XM_022678220.1
CGCGTCCAATTTTAGAGTGCAGAGTTGACGTTGGGGCTCTAGTTTAGGTTCATTAACAACAACTCCCCAACCCAAACAAACCCAGAACCTGCAGAACCCCGAGGAACAAGCCGCTCATTCTGCGGGGTTTGGAGGAGAAGGAGCTGAGATGGCGGAGTGGGAGGAGATCCGGAGACTCGCTGCTGATTTCCAGAGAGCACAGTTCGCAGATTCAGCGCAGCGGGATAGCGTTAGCTATCGGCCAGgaCGTATCAACATTGTGGAGCTCCAGAAGCTCATTAATGTTGACCTGGTGCATGTGGAGAGCCGAGCCATTGAGGTTTCAAAACAGGACAGAGGAACACACTTGATCTTGGGTCAGCTGATTGATGAGAAGTATCTGGATCAGCTTGCAGAGGAAGTGAATGATAAGCTACAGGAAGTGGGACAGGTGAACACGGCGGAGCTCTGCAAAACCTACGACCTGCCCGGAGATTTCCTCACACAGGAGTTGTGTGGGCGAGTTGGCCGAATAATTGATGGACAGGTGGATGAGTTTAATCGAGGTGTGATTTTCACTCAGGCTTTCATTTGCCGACAAACAGCCCGAATACGGGGGGTCTTCAGTGCCCTCACCaggccTACACCAGTCAGCGCtctgatcagtgtttttgggttCCATGAAAATCTCTTATACTcGGTTCTGGAGGAGTTGGTGAATTCCGGCCGGTTGAAGGGTACAGTGGTTGGGGGTCGGCAGGATAAAGCTGTttatattcctgaaatttacTCCAGAACACAAAACGCCTGGGTGGACTCCTTCCTCAAACAGAACGGATACCTGGAGTTTGAGGCGCTGACCCGACTGGGTATTCCTGATCCTGTGAGCTACATTAAGAAGCGTTTAAAATCCAGTAAGCTGCTGTTTTTGAGATCTGCGTGTGTCGGGCCAGAGATCATAGCCCAGTTGGAGGCGTCGGTGGAGGAGGCCATTAGTTCACAGACCTGGGTCGACTTACAGGTACACTTTAAACTATTGATCATTAATCATTTACTGCATTAACGAATGagcttaaatctgattttcatATTTCCAAAAACAACCATTGTGGTTGTCAGTGAGAAGTTCATCAGCAGCTGCATGACTCTGTTTGATGACATGATGCAGCAGAAGGCACAGAAGGAGGTGAAGAATAACCCTGTGTTTTTGGTGACTGAGGAGGATCTGAAAGTTTCAGCAATGCTGGAAAGTTCCTCCTCATCCAAGAAAGACAAACGAGAAGACAGACGGAAAAAAGCTTCAGaggGCAGTGGAAGTTTGAGATCCGGTGGTGGAGGAAACGCTCGAGAAATCCGAATTcgaaaaaccaaaaaaaagaacCGAAGAGATGGAGACAGCGATGATGAGCCGGACACTACACAAAgtcgCAGTAAGCAGTCTGAGGTTCCGTTTCTGCCCGTGGAAAAAATTCTGGAGGTCCTTGAAGTAAAAGTTACGGACTGCCCTGAGGAAACACTTGAGCAGCTTGCAGAGCAGCTTCTGAgGCCGCTGACCCTTAAGTACCAGGAAGTGATCCACACAGCCTTCCTGTCATCAAGCTCATCTGGCTCCAGCGGGACTCGAAAGCAGAACGTGAAGGACGTCCAGGAGGAGATAAACAACCTGTACAACAACATCCGTCTGTTCGAGAAAGGGACCAAACTTTTCTCAGaTGATACTCAGCAGCTGATGATGAAACACATCCTTCGCACCGTCTGCACTGACCTGACCAACATCCTGCTTAACTTCATGGCAGCTGATCTTATGATGGCCACAGAGAACCCCAGCTCCATCACTGCTGAGgTGAGAATGAAGATTTTGGGCAAACTCTCTGATGAAACTAAAGCACCGCTCATGAAGCTCCACAACAGTCTGAATGGAAAGacTGTTGAGGACTTCCTGTCCAGTCTTGAAGCTGCTGCTGAGGACTGTGGGTTGATGCTGAAGAAAACGgataagaaaaaagagaggcAGGCTCTTCTCCTCCATAAGCAGGCTTTATTGGAGCAGTTAAATGTAGCGGAGGATCCGGCTCTGATCCTGCACCTGACCAGCGTCCTGTTGTTCCAGAACCTGATGCACTGCATGCTGCACGCTCCAGGCCGCTGCGTCCCAAACATCATCGGCACCCTGCAGCCCAAACTGTCGGAGgACCAGTATAAGTTACTGGTGCAGTATCAGGGGCTGGTGGTGAAGCGGCTAGTGCAGAGTCACAGCCAGGAGAAAAAGGCTGATGGGGCGGAGCAAGGAGGTGAGGACAGTTCTGCTGAACTGGAGTCTGTGCTAAAGGAGCTGAACAGCCTCAGCGGCACCATCAAAGAGCTCGTCCTCAATCCACGAAAACCGTCCACCACAGAGGACTGAGCGCACAGCGGGAGTGGTGGAACCTGTCCTGATCACTAGCTGAACCTGAAGACATTTCTTAATTAAATACTAATTAtgtttactgttaataaactaaAGCGACTGAAAGTCAGTGTTAAAGATGAATTGACTCAGAACCCAGAAAACCTGACCCTCATGCTGAGGGTTTTGGGAACTGCAgtcaaacacaaataaaagtcCTCAAAGGTGACAAAATGATGTGTGATGACTTTGATAATCGTTTGTGCGTGTGATGTGTGAAAGTAATGGGAATAAATGTGTGTCCTTTTCTGTAGCTATTTAGGTCAGGTACActtgatttttatttgtttagttccACAGCTAAGCCACAGAGGTCAGACTGGGCTCCGCCTGTGCGCCCTGCAGAGTTCTGCTCTCAACACCTGCATTCAGCTCCCACAGGCCTCACTAATCTGCTGCTGAGCTGACTGGGGAGCGTTAAAAAATTACCAG

Function

symbol description
ufl1 Predicted to enable UFM1 ligase activity. Predicted to be involved in several processes, including cellular protein modification process; hemopoiesis; and regulation of cellular catabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in endoplasmic reticulum; nucleus; and site of double-strand break. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human UFL1 (UFM1 specific ligase 1).

NR:

description
PREDICTED: E3 UFM1-protein ligase 1

GO:

id name namespace
GO:0071569 protein ufmylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0071568 UFM1 transferase activity molecular_function

KEGG:

id description
K22755 UFL1; E3 UFM1-protein ligase 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU32955 False 1047 lncRNA 0.45 8 38256107 38259421
XM_022678220.1 True 2857 mRNA 0.49 19 38246771 38263674

Neighbor

gene id symbol gene type direction distance location
ercc6l ercc6l coding downstream 144878 38092920 ~ 38101893 (-)
LOC103044706 NA coding downstream 170670 38052436 ~ 38076101 (-)
rnf128 NA coding downstream 201545 38028086 ~ 38045226 (-)
tbc1d8b tbc1d8b,si:dkey-110k5.6 coding downstream 220479 37995886 ~ 38026292 (-)
mtmr2 mtmr2,LOC107592277,LOC107747813,LOC107597225,LOC107680397,LOC107732604 coding downstream 279149 37955299 ~ 37967622 (-)
gpr63 gpr63 coding upstream 4139 38267813 ~ 38273320 (-)
dse dse coding upstream 16029 38279703 ~ 38299572 (-)
nt5dc1 nt5dc1,LOC107704358,LOC107565441,LOC102795200 coding upstream 43103 38306777 ~ 38355866 (-)
marcks NA coding upstream 186319 38449993 ~ 38454191 (-)
mfsd4b NA coding upstream 544186 38807860 ~ 38815899 (-)
G24424 NA non-coding downstream 124016 38122554 ~ 38122755 (-)
G24422 NA non-coding downstream 166963 38078676 ~ 38079808 (-)
G24300 NA non-coding downstream 605471 37638406 ~ 37641300 (-)
LOC111191735 NA non-coding downstream 628574 37612657 ~ 37618197 (-)
G24201 igbp1,LOC107746347,LOC106567775 non-coding downstream 728965 37512501 ~ 37517806 (-)
G24505 NA non-coding upstream 95805 38359479 ~ 38400194 (-)
G24510 NA non-coding upstream 132329 38396003 ~ 38396378 (-)
G24511 NA non-coding upstream 153073 38416747 ~ 38416967 (-)
G24517 NA non-coding upstream 185992 38449666 ~ 38449929 (-)
G24522 NA non-coding upstream 243707 38507381 ~ 38507614 (-)
fam76b fam76b,fa76b,LOC106603374 other downstream 292036 37938829 ~ 37954735 (-)
G24150 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 other downstream 1242816 36983209 ~ 37003955 (-)
G24107 NA other downstream 1503741 36735201 ~ 36743030 (-)
G23984 NA other downstream 2149005 36091784 ~ 36097766 (-)
G23927 msn,LOC108411308 other downstream 2322817 35895511 ~ 35923954 (-)
ndufaf4 ndufaf4 other upstream 11792 38275466 ~ 38277715 (-)
wisp3 wisp3 other upstream 347372 38611046 ~ 38627052 (-)
LOC103024598 LOC108411439 other upstream 623952 38887626 ~ 38922917 (-)
smim8 smim8 other upstream 661949 38925623 ~ 38926993 (-)
LOC103043888 LOC108432835 other upstream 1009961 39273635 ~ 39346916 (-)

Expression


Co-expression Network