G24531


Basic Information

Item Value
gene id G24531
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38581627 ~ 38582793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33011
AGACAGTCCGGCATTTGttcagtaattagacagtgtTGCACTCCCTGTGCGCATGTCCTCCTCAATTTGACAGGTGAAGGACTTTACGTGCacggagagagaaagaccgTATTGTTTGCCCAGAAGCCTCCTTTGTATTAAGTTAGGTCATGCAGAATGCACTATCTGATAATTTGTAGCGGTTAGTGAGAAAAACATGCAATCACACAATGTGTTTCAGTGAGGTGTCAGTGGCGCGTGATTCGTCTGCCATACAATTAGGTCTATACgtttatgtatcatgtgggttagttTGTCAGCCTAAGGCCTGTGTTTAGTCACATGCTTGTTAAAAACAATGCTTCACTATATACGTGAAGAATATGGTGGTTAATGGTTAGTTTTCtatgtaaaatgtgtgtaagatatactgtgagtaataaaatgatcaaatatagcGTTaatattggttaatgcatataaaatagttatgaaatgatcaaatgtagtgtgagtattggttagtgcatataaaatacaaggtttcacacgatgattatgtaattttagataccaagataagtaatcatgatTGTGAGATGTTTGTCAATATATTCAAGGTAAAACAAGGTTTCTTCGTAAGATTTCCCACAATTCCCCCTTTCGACGTATCAAACAGATACGTCGACAAACCGTAATTCCTCCAAATCATGTATTTACATATGTTCAACACTTGAAAACATGTGTATGaacattttactaaaatgtgAGAGCGAAAACCTGTCGCGGCAGCCTTCCAACCTATGTTGACAGGAAAAATTCTCTCACAGCCCCTCTGCCACCCAGGCGGCTAATGAGATGAACTCTATCAAAGGAGGAAGTGACATCGTAACCTTAAAGTCATCCCCAAGACTAGTTGGTTTACAGCAGttcctcttgctcttccttacATTCCAGTATAGGCCGATCCCAATTGACATGTGTCGACCTAATTACGTATAAGCTGCTTAATCGGTGTTATGGGTGATTCTCATGAAGCTGCATGCAACATGTCCATGAcaatttttaaaatcagtacttAATTCACAAAAACTCTGATATTGTGTGTAAAGCAAATAGGTAGTACTGTATGGATCAATTGTTTTCATTATCatagaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33011 True 1139 lncRNA 0.38 2 38581627 38582793

Neighbor

gene id symbol gene type direction distance location
lama4 NA coding upstream 4468 38526578 ~ 38577159 (+)
hdac2 hdac2,LOC108416127 coding upstream 143563 38428649 ~ 38438064 (+)
hs3st5 hs3st5 coding upstream 153709 38416750 ~ 38427918 (+)
LOC103029663 NA coding upstream 181306 38381590 ~ 38400321 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding upstream 231303 38344389 ~ 38350324 (+)
LOC103028301 LOC108415536,LOC107709524 coding downstream 62538 38645331 ~ 38662640 (+)
LOC111191700 LOC108415880 coding downstream 138884 38721677 ~ 38726048 (+)
traf3ip2 LOC107550525 coding downstream 146519 38729312 ~ 38742584 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding downstream 164684 38747477 ~ 38800101 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding downstream 345845 38928638 ~ 38933850 (+)
G24485 NA non-coding upstream 78109 38503227 ~ 38503518 (+)
G24476 NA non-coding upstream 88922 38449995 ~ 38492705 (+)
G24474 NA non-coding upstream 140967 38440352 ~ 38440660 (+)
G24437 ufl1 non-coding upstream 322378 38256201 ~ 38259249 (+)
G24432 NA non-coding upstream 335338 38243485 ~ 38246289 (+)
G24535 NA non-coding downstream 8148 38590941 ~ 38592527 (+)
G24541 NA non-coding downstream 34309 38617102 ~ 38617433 (+)
G24542 wisp3 non-coding downstream 34693 38617486 ~ 38617866 (+)
G24543 wisp3 non-coding downstream 37449 38620242 ~ 38620480 (+)
G24546 NA non-coding downstream 45975 38628768 ~ 38628976 (+)
G24463 NA other upstream 199317 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 202291 38359460 ~ 38379336 (+)
G24431 NA other upstream 344586 38232593 ~ 38237041 (+)
G24390 NA other upstream 483303 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 647638 37928355 ~ 37933989 (+)
G24534 NA other downstream 2646 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 84716 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 342903 38925696 ~ 38926982 (+)
G24583 NA other downstream 356564 38939357 ~ 38947222 (+)
G24719 NA other downstream 462377 39045170 ~ 39045781 (+)

Expression


Co-expression Network