G24535


Basic Information

Item Value
gene id G24535
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38590941 ~ 38592527 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33022
tattaatattaacacttccccaaccttgcttacattaaagtatactttactcatgattgggtattcacagtttcatattttcattttagaacTGTCTTATAACCtatgcatatattatattatattatagttatatgtagcatcagtcactttcgtaatcgatgtcatcacactttactcttttatttattgaattatttatgaccattagtaatatctactgcactgctccgtttacagatagatccttaccttgtatagttaggttttgtatatccttatattttcttatatatatatatctatttctatcCATACAAAAACCTTTTCCCCCTGTTCACCTCTGTCCCCCATCTCACAAGTGCTAATTCACAAATAGCCAACCTCTCAGTCTAGAGCCAATAGGCTGGACCAACTCCACCTACTTCACCTTGGACTCCTCCCCTGCAGTGGGACTCATCCATTACTATTTCGTTTACACACAAGAGTTCGTACACGCAACCAATCACACCGCTCACAGGAACCCTGCGCACACACTTCTGtttcactcgctctgtctcgcACACACTGTAACGCATACGCACACACTTTTTTCAGTCTCACAGTTCCACACACAAGTCtaacacatgcgcacacacatttcagcagcgctcactctctcgcacacagTCTTTGATTCGCTGCCACACACTTTCACGCTCACAGGTGCACCTCCACAGTATCATGCAATaactattaatttaataacttttaaaagttCGTAGTAGGTACAGCGTATACTAATTTTTTACGAAATGTTTTGAACAGGAAcaacatctgtttatttttaacacaaacaTAAGAGACTTTCAGTAGGAACAGCGTCTACTCTTCCGAATTAAAAATAGGGAGGTCGGTACGGCGTCGACCCGAGCAGGTACAGcttctgctctttttaaccaaataaaatagataagaatAGGTACAGCGTCTACTCTTCTGAATTAAAAATAGAGAGGTCGGTACAGCGTCGACCCGAGCAGGTACAGCTTCTGCTCTTTTAAACCGAATAAAAATAGAGGTGAGTAGGTACAGCGTCTACTCTGGCTTTTTGCGAGCGGATCAATATCGAGGTGAGCCTTACACCTGGCCGTTATCCGAACTTCTCGTCAGAAGCCGGGGGGAGACGCCAGCATCCAATCCTTAACCCCTTGATTAGGAACAACATCTAATCTTTTTATAAAcctttgagtaggaacagcctCTACTCTTTAATATCCTGGAATAGGCACAACTTCTATTCTCATTTAAATAGCTTGTTATGCTGTCTGCTTCCCTCCGGACAGCAGCCAGGCCGCCGCTCCACTCAAATTTAGAAATAACCAATATGCAGAATTTGATAAAACCGGCTCTGCTTACCTTTTTAGTAGAAGTTCGGCCGTGAGTGGGTTGGCGTCGGATGCTGCCCTTCTGTTAGACTCTTTGGGGTCCAAAATGTCGGGG
>TU33023
tattaatattaacacttccccaaccttgcttacattaaagtatactttactcatgattgggtattcacagtttcatattttcattttagaacTGTCTTATAACCtatgcatatattatattatattatagttatatgtagcatcagtcactttcgtaatcgatgtcatcacactttactcttttatttattgaattatttatgaccattagtaatatctactgcactgctccgtttacagatagatccttaccttgtatagttaggttttgtatatccttatattttcttatatatatatatctatttctatcCATACAAAAACCTTTTCCCCCTGTTCACCTCTGTCCCCCATCTCACAAGTGCTAATTCACAAATAGCCAACCTCTCAGTCTAGAGCCAATAGGCTGGACCAACTCCACCTACTTCACCTTGGACTCCTCCCCTGCAGTGGGACTCATCCATTACTATTTCGTTTACACACAAGAGTTCGTACACGCAACCAATCACACCGCTCACAGGAACCCTGCGCACACACTTCTGtttcactcgctctgtctcgcACACACTGTAACGCATACGCACACACTTTTTTCAGTCTCACAGTTCCACACACAAGTCtaacacatgcgcacacacatttcagcagcgctcactctctcgcacacagTCTTTGATTCGCTGCCACACACTTTCACGCTCACAGGTGCACCTCCACAGTATCATGCAATaactattaatttaataacttttaaaagttCGTAGTAGGAACAGCGTCTACTCTTCCGAATTAAAAATAGGGAGGTCGGTACGGCGTCGACCCGAGCAGGTACAGcttctgctctttttaaccaaataaaatagataagaatAGGTACAGCGTCTACTCTTCTGAATTAAAAATAGAGAGGTCGGTACAGCGTCGACCCGAGCAGGTACAGCTTCTGCTCTTTTAaccaaataaaatagataagaatAGGTACAGCGTCTACTCTTCTGAATTAAAAATAGAGAGGTCGGTACAGCGTCGACCCGAGCAGGTACAGCTTCTGCTCTTTTAAACCGAATAAAAATAGAGGTGAGTAGGTACAGCGTCTACTCTGGCTTTTTGCGAGCGGATCAATATCGAGGTGAGCCTTACACCTGGCCGTTATCCGAACTTCTCGTCAGAAGCCGGGGGGAGACGCCAGCATCCAATCCTTAACCCCTTGATTAGGAACAACATCTAATCTTTTTATAAAcctttgagtaggaacagcctCTACTCTTTAATATCCTGGAATAGGCACAACTTCTATTCTCATTTAAATAGCTTGTTATGCTGTCTGCTTCCCTCCGGACAGCAGCCAGGCCGCCGCTCCACTCAAATTTAGAAATAACCAATATGCAGAATTTGATAAAACCGGCTCTGCTTACCTTTTTAGTAGAAGTTCGGCCGTGAGTGGGTTGGCGTCGGATGCTGCCCTTCTGTTAGACTCTTTGGGGTCCAAAATGTCGGGG
>TU33024
tattaatattaacacttccccaaccttgcttacattaaagtatactttactcatgattgggtattcacagtttcatattttcattttagaacTGTCTTATAACCtatgcatatattatattatattatagttatatgtagcatcagtcactttcgtaatcgatgtcatcacactttactcttttatttattgaattatttatgaccattagtaatatctactgcactgctccgtttacagatagatccttaccttgtatagttaggttttgtatatccttatattttcttatatatatatatctatttctatcCATACAAAAACCTTTTCCCCCTGTTCACCTCTGTCCCCCATCTCACAAGTGCTAATTCACAAATAGCCAACCTCTCAGTCTAGAGCCAATAGGCTGGACCAACTCCACCTACTTCACCTTGGACTCCTCCCCTGCAGTGGGACTCATCCATTACTATTTCGTTTACACACAAGAGTTCGTACACGCAACCAATCACACCGCTCACAGGAACCCTGCGCACACACTTCTGtttcactcgctctgtctcgcACACACTGTAACGCATACGCACACACTTTTTTCAGTCTCACAGTTCCACACACAAGTCtaacacatgcgcacacacatttcagcagcgctcactctctcgcacacagTCTTTGATTCGCTGCCACACACTTTCACGCTCACAGGTGCACCTCCACAGTATCATGCAATaactattaatttaataacttttaaaagttCGTAGTAGGTACAGCGTATACTAATTTTTTACGAAATGTTTTGAACAGGAAcaacatctgtttatttttaacacaaacaTAAGAGACTTTCAGTAGGAACAGCGTCTACTCTTCCGAATTAAAAATAGGGAGGTCGGTACGGCGTCGACCCGAGCAGGTACAGcttctgctctttttaaccaaataaaatagataagaatAGGTACAGCGTCTACTCTTCTGAATTAAAAATAGAGAGGTCGGTACAGCGTCGACCCGAGCAGGTACAGCTTCTGCTCTTTTAAACCGAATAAAAATAGAGGTGAGTAGGTACAGCGTCTACTCTGGCTTTTTGCGAGCGGATCAATATCGAGGTGAGCCTTACACCTGGCCGTTATCCGAACTTCTCGTCAGAAGCCGGGGGGAGACGCCAGCATCCAATCCTTAACCCCTTGATTAGGAACAACATCTAATCTTTTTATAAAcctttgagtaggaacagcctCTACTCTTTAATATCCTGGAATAGGCACAACTTCTATTCTCATTTAAATAGCTTGTTATGCTGTCTGCTTCCCTCCGGACAGCAGCCAGGCCGCCGCTCCACTCAAATTTAGAAATAACCAATATGCAGAATTTGATAAAACCGGCTCTGCTTACCTTTTTAGTAGAAGTTCGGCCGTGAGTGGGTTGGCGTCGGATGCTGCCCTTCTGTTAGACTCTTTGGGGTCCAAAATGTCGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33022 False 1482 lncRNA 0.41 2 38590941 38592527
TU33023 True 1499 lncRNA 0.42 2 38590941 38592527
TU33024 False 1482 lncRNA 0.43 2 38590941 38592527

Neighbor

gene id symbol gene type direction distance location
lama4 NA coding upstream 13782 38526578 ~ 38577159 (+)
hdac2 hdac2,LOC108416127 coding upstream 152877 38428649 ~ 38438064 (+)
hs3st5 hs3st5 coding upstream 163023 38416750 ~ 38427918 (+)
LOC103029663 NA coding upstream 190620 38381590 ~ 38400321 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding upstream 240617 38344389 ~ 38350324 (+)
LOC103028301 LOC108415536,LOC107709524 coding downstream 52804 38645331 ~ 38662640 (+)
LOC111191700 LOC108415880 coding downstream 129150 38721677 ~ 38726048 (+)
traf3ip2 LOC107550525 coding downstream 136785 38729312 ~ 38742584 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding downstream 154950 38747477 ~ 38800101 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding downstream 336111 38928638 ~ 38933850 (+)
G24531 NA non-coding upstream 8148 38581627 ~ 38582793 (+)
G24485 NA non-coding upstream 87423 38503227 ~ 38503518 (+)
G24476 NA non-coding upstream 98236 38449995 ~ 38492705 (+)
G24474 NA non-coding upstream 150281 38440352 ~ 38440660 (+)
G24437 ufl1 non-coding upstream 331692 38256201 ~ 38259249 (+)
G24541 NA non-coding downstream 24575 38617102 ~ 38617433 (+)
G24542 wisp3 non-coding downstream 24959 38617486 ~ 38617866 (+)
G24543 wisp3 non-coding downstream 27715 38620242 ~ 38620480 (+)
G24546 NA non-coding downstream 36241 38628768 ~ 38628976 (+)
G24559 NA non-coding downstream 212813 38805340 ~ 38809014 (+)
G24534 NA other upstream 4663 38585439 ~ 38586278 (+)
G24463 NA other upstream 208631 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 211605 38359460 ~ 38379336 (+)
G24431 NA other upstream 353900 38232593 ~ 38237041 (+)
G24390 NA other upstream 492617 38092974 ~ 38098324 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 74982 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 333169 38925696 ~ 38926982 (+)
G24583 NA other downstream 346830 38939357 ~ 38947222 (+)
G24719 NA other downstream 452643 39045170 ~ 39045781 (+)
LOC111196173 NA other downstream 732556 39325083 ~ 39340971 (+)

Expression


Co-expression Network