G24594 (smim8)


Basic Information

Item Value
gene id G24594
gene name smim8
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38925696 ~ 38926982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33100
AAGCAGCTTTGACACAAATACACTCCTGTTCATTATATTTAGACAAAAATAGGccataaacataataaaacaaaatcattcTGTTTATCTGAAAACATACACCAATAGGCCTCATTATGAGTTAACTATAAAGTCCTTTTGGAGATGGATTAAGAGTATCAGAGCCTGAAAACTCCAATCTGTTCAATGGATTACAGGCCCGGTGCTGAGAAACAGTGATTCCTATACAACCACTGATATAGTGTAATTTATGCATTAAATTATAATGAACAAAAGCTGTGGAGGAGAATAGAGCAAGCAGAGAGCAGCTTCCACCAGAAGAAATCCATCAGTCCCATTTGGAGCTTTTTCTGCACATGTATTTCTCCCCCTCGCTGTCTATGGCTTCATATAGCTCCTGCGTGTTCTCCTTCACCGCATGCAGATACCCCAGATACCCCACACACAGCGTCAGGGTGATCAAGCCAAACGCCATCACTGGTTTATTAGGTTTGATGAAGAGCTCTGGATTCACTGCTCTGAACAGTGTGGTGCTCTTCACTCCTCTCAGTCCGGGACTGCGGTACTGCTCTTTCTTATCCGGCTCCATCACAGTccCCTGCAGCGCCTCCTCACTGATACAGAAACAAAACACGGAGCCGGAGCGCTCCAGCTCCACAGCTCCACCTGCTGACCGGAGTACAGCTCT

Function

symbol description
smim8 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM8 (small integral membrane protein 8).

NR:

description
PREDICTED: small integral membrane protein 8 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33100 True 688 TUCP 0.45 3 38925696 38926982

Neighbor

gene id symbol gene type direction distance location
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 125595 38747477 ~ 38800101 (+)
traf3ip2 LOC107550525 coding upstream 183112 38729312 ~ 38742584 (+)
LOC111191700 LOC108415880 coding upstream 199648 38721677 ~ 38726048 (+)
LOC103028301 LOC108415536,LOC107709524 coding upstream 263056 38645331 ~ 38662640 (+)
tube1 tube1 coding upstream 319056 38579963 ~ 38606640 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding downstream 1656 38928638 ~ 38933850 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding downstream 220550 39147532 ~ 39153428 (+)
rars2 rars2 coding downstream 228644 39155626 ~ 39171955 (+)
LOC103045608 LOC108411441 coding downstream 287199 39214181 ~ 39222236 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 438825 39365807 ~ 39368293 (+)
G24589 NA non-coding upstream 24330 38900986 ~ 38901366 (+)
G24578 NA non-coding upstream 38831 38886443 ~ 38886865 (+)
G24580 NA non-coding upstream 40977 38884087 ~ 38884719 (+)
G24579 NA non-coding upstream 41684 38883288 ~ 38884012 (+)
G24575 rpf2,LOC102791246 non-coding upstream 48039 38868734 ~ 38877657 (+)
G24735 LOC101072348,LOC108415889,LOC103369403 non-coding downstream 204300 39131282 ~ 39144818 (+)
G24739 slc35a1,LOC106607707 non-coding downstream 246855 39173837 ~ 39180117 (+)
G24742 slc35a1,LOC106607707 non-coding downstream 257544 39184526 ~ 39192171 (+)
G24743 NA non-coding downstream 260798 39187780 ~ 39188334 (+)
G24748 NA non-coding downstream 315460 39242442 ~ 39251843 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 208261 38667509 ~ 38717435 (+)
G24534 NA other upstream 339418 38585439 ~ 38586278 (+)
G24463 NA other upstream 543386 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 546360 38359460 ~ 38379336 (+)
G24431 NA other upstream 688655 38232593 ~ 38237041 (+)
G24583 NA other downstream 12375 38939357 ~ 38947222 (+)
G24719 NA other downstream 118188 39045170 ~ 39045781 (+)
LOC111196173 NA other downstream 398101 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 461885 39388867 ~ 39397878 (+)
G24972 NA other downstream 892294 39819276 ~ 39825718 (+)

Expression


Co-expression Network