G24651


Basic Information

Item Value
gene id G24651
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38713445 ~ 38717393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33166
TTAACAAAAGGAAATGTTTAAATTGAGATGGAAAATATAGCAGAGTGGATTTTCTGATACAGTAAAGTTACTGTAAAAGCAAACAGCattttcttcatcatcatccagCCCTGTTACAACATACTGCTCCAGTCCAAGGATTTACACACCTGATCATGAAGAGTTCTTGgtgttattttaatgtgttaGAATATAACATAAGGGTAAAGacaataaactataaaatgaCAGTTAAAAAGCGTAATTTCTTAGAAGTTGTTACAAGAATAAATTCATACGCAGGCATCAAGAtcactattaattgttttagaataaaatctcaagcatttaattttttttacctttaggtcaaaaaacataaaatgttcaTTAACTCAGGTGTGCTCAGACTTCTGACTGGAGGAGATATATTCCCTTCAAAATTCACTCTATTATAAAGCTatagttaaatattaaacattatggcagaggataaaaaacaaaacattaaaaagaaaaaaaacgtccATCCTGCTGTGTCACAGAGAGAGAAGACGTAATGACGTGGAGGAGTGGTCCGTGAGAGTCCTTCCAAGGGTCTGATCATTGTAAGACCTGAGAAGGGGGGTAGGGTAAAGTAACACCACTGAAAACGTGGCCGTCAAACTTTTGTCCTTAATCTGAAATAAAGATCCGCTTCAAGTAATCATTCACTCTGTCTGGCCCAGCTGAGGATATGTCTAAAAAATACTCTCATAACATTcgacaaaatacaaaaagcaacatatattattatttttaaaatagcttttgttatattttttaaaagaaactttTCTGCTGTAAAGCGACagtctggcaaaaaaaaaaaaacggattacCCCAGTCTTTATACTACATGTGCAGTCGATTagccaagacatgtttgatATATGAAGATTTGCATTAGAACTATGAGGCTTATGTAGCTACAGTATTAAAAGCTCATACCCCATCTATTTtcactggagctatgaggctaatgaaGCTAACAATAATGAAATAACATACCCCAGCCATTAGCACTAGAACTGTAAAGCTACTGTAGCTAACATGTTTTGAAAACTCATACCCCAGCAATTAGCACTAGAActgtgaggctaatgtagctaacaactATGGAAAGCTTATACCCCAGCAATTAGCATGGGAGCAATGAGGCTAATATAGCTAACATGTATAGAAAACTCATACACCAGCAATTAGCATgggagctatgaggctaatgtagctaacatgtTTCGAAAACTCATACACCAGCAATTATCACTGGAGTTATGAGGCTAATGAggctaacatttttttttaaactcatacTTTAACAATCTGTCTTTGACAGTCATGTGTGTTTACAATGCGAAACAACACCAAAGCGGCATGTTTAAGTTACTCTGAGCTGCACAGTAGATGTACTAGAAACAAACTTGCTtttataatcttaaaaaaatttaaagcaaTGAAATTTGAGAACCAGAAGAAACACATGTGCACGGGTCTGAACAAATACCTTTGAAGACtatcattttatataatattttaatggtttttaactTTAAGAGAGGTTTCAGACCCAACATTTTCTCAAAACTACGGTGTGTTCATAACTTTTTGGCGTAATAAATTTGGACAGTGAGGGAGTTTTCAGAGGCTCAGATGTCTATGTGTGCTTGTTACAGCAGACTTCGTTTGTATTACATTTTCCTCCATTAAATCAAGAGTCAGGACACATTTTGGCTGTAAAAACAACAACGAAAGACCTAAAGTCTAGtcataaaataaatctgaaatattgtttaaataattacataatcagtGTCATGATcataaaatgtctgaaataatcTTGAAGTGCAGCCTGTTTCTGCTGCCTTGCCTGAGATTCTGAGGTGTACTGCTAGCCTgactaaactaaaacaactTGTGGATGTGatgctagcattagcattagctactttaAAAGACAGGAAATCAATCAATCCAGTCAAATACACAACAGAAGTGTACAGaggaaatacaaataaaagagCGAAGGAAAATACATCTGACTGCAGAACAGCCTGAACACAAAATACCTTCAGcatggagttaaacaaaaaaaagaacctCACTGCTATATCACCTGCCAACAACTAATTACCTTTGGCACTACAAATGTAGCTAATGCATAATGTAAGCCAGACTAACTACTggaccatttaaggtggaatagaattGTTTTGACAGGAATTCTCAAATagacttttttatatagtttcttGTTCTGTTTTGAGTCCCATTTATCTATAACACTGACTAAAGTACAGACACAGTTTATGGTTCTTGCTAGGATATATTTCAATTCACTTCTTcaacatgtcttggctgatggactacacagaataaaatgttatttattgttttttttattgccaagctattctttaaaaaaagaacattaataaaatatgaaaccttttgaaagataaaagaaagataaaccaaaacaaaaaaacaaaataacccCAAAAATCTCATTCTGGCAGCTATTACTGTGGCTAGACTTATGATTAATGGGTAATGAAATAGAAAGACAagatgaaaacaataaaaacaggaacagaaaactgaataaaaatatcataaagCAGACAAGCTGAAATATTATACTGATTACCGCCACTTCATTGCATCGTTAATCATTAGGGTGCTTTTCACATACGCTGAAAGTCAGAAAATTGTCACATCACCAGTAACTGTAATTTACTAGATTTCTCACTTAGAGTGCTGTGCAAACATTTTAGGCCCCTGAGCACATTGTTTAAAACCAATCAGCTGGGCAGTGTGCATGTGTACACTTGCAGAAACACCTTATTAGCAGTCCCTCCAGCAATGTGCAATGTTGAGACTGTAAGAATTCAAAACTGGGAAgagttctaaaacttttgactggcagtGTAGAAGATTAAATTGAGATGCTGTCGAAACGAATTAATGGCGAATGCTCTAATAAGTAAAGTAAACATATTGAAgtgatacatttatattttatccaCTGCTCAATTTTTACACAATTGGAAAATCTACTGAATCAAGAAacactgtattgtgttgtatcaaagtgaattaaataatacattgaaTCATTACACTCCTAATATTTACCATTAACTTTGTAGATTGTTTGTTAAATATTCTGGCAGGTGCACATTTAAGCTTCCAAACGGTTCTTTTAAGTTATTATGGGTCTATGTAGAGACATCTATAAAAGCAAAGTACCCTTTTATGCAGTCAAAGAACCTTTTAAGCCTCAGACTGTCATGATTCCAAGCAGAACCATTTCCTTTAACTTTTTTTCGTGGACAAACCGGAGATTCCAAAACTTAAACAACCACCATTTCCATCCTGCCCATTTCCTACATTACCCACAAATCCCCTTCTGCTCCGCTGCTCAGTGTCTGATTTGTCAGTCCAAGTGTGTCATAGTTGAACATTTTTCTCTCCGCCAAAATCACCAGCTGCTTCACATCTGCAGGGAACTGTTTGGTATGTTGTGAAGCTTTACTATGACATATAGACAGGCAGGGGGCGCTAAAGGGGTGTTCCCCAGTGTGGATCAGTAGGGGTGGGTTAAAGGTTGTCTCCAGGCTGGTACTGCGGCTCCGTGGCGGTGAAGTAGTCCTCCAGGAAGGCCTGCAGATACTCAAAGGTGGGCCGCTCTTCCGGCTCCTTCTTCCAGCACAGAACCATCAGCTCATGCAGAGAACTGGGGCAGTCCGACGGACACTGCATGCGGTACCCCCGCTCTACCTGCTCTAGAACCTCCCGATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33166 True 3827 lncRNA 0.40 2 38713445 38717393

Neighbor

gene id symbol gene type direction distance location
marcks NA coding downstream 259254 38449993 ~ 38454191 (-)
nt5dc1 nt5dc1,LOC107704358,LOC107565441,LOC102795200 coding downstream 357579 38306777 ~ 38355866 (-)
dse dse coding downstream 413873 38279703 ~ 38299572 (-)
gpr63 gpr63 coding downstream 440125 38267813 ~ 38273320 (-)
ercc6l ercc6l coding downstream 611552 38092920 ~ 38101893 (-)
mfsd4b NA coding upstream 90467 38807860 ~ 38815899 (-)
slc16a10 slc16a10,LOC107688318 coding upstream 99814 38817207 ~ 38861165 (-)
rpf2 rpf2,LOC102791246,LOC106571313 coding upstream 150017 38867410 ~ 38877719 (-)
znf292 NA coding upstream 222005 38939398 ~ 38953445 (-)
htr1e htr1e coding upstream 239646 38957039 ~ 39011092 (-)
G24635 NA non-coding downstream 96417 38616526 ~ 38617028 (-)
G24604 NA non-coding downstream 102706 38607985 ~ 38610739 (-)
G24624 NA non-coding downstream 121035 38590941 ~ 38592410 (-)
G24625 NA non-coding downstream 123904 38587924 ~ 38589541 (-)
G24623 NA non-coding downstream 126542 38586559 ~ 38586903 (-)
G24694 NA non-coding upstream 165506 38882899 ~ 38883165 (-)
G24688 NA non-coding upstream 166695 38884088 ~ 38884609 (-)
G24697 NA non-coding upstream 169054 38886447 ~ 38886866 (-)
G24698 NA non-coding upstream 169540 38886933 ~ 38887142 (-)
G24716 NA non-coding upstream 242289 38959682 ~ 38962053 (-)
wisp3 wisp3 other downstream 86393 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 435730 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 449771 38246771 ~ 38263674 (-)
fam76b fam76b,fa76b,LOC106603374 other downstream 758710 37938829 ~ 37954735 (-)
G24150 cunhxorf56,cssa13hxorf56,zgc:103697,LOC107548454,LOC107655899,LOC101478835 other downstream 1709490 36983209 ~ 37003955 (-)
LOC103024598 LOC108411439 other upstream 170233 38887626 ~ 38922917 (-)
smim8 smim8 other upstream 208230 38925623 ~ 38926993 (-)
LOC103043888 LOC108432835 other upstream 556242 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other upstream 592333 39309726 ~ 39324702 (-)
G24903 NA other upstream 737843 39455236 ~ 39458189 (-)

Expression


Co-expression Network