G24735 (LOC101072348,LOC108415889,LOC103369403)


Basic Information

Item Value
gene id G24735
gene name LOC101072348,LOC108415889,LOC103369403
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39131282 ~ 39144818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33273
acCAATAGTTCATTTAAATCCAAACACATCCTTAAAACAAAGTTTAGATGGGATGAAAATTTGTGTACAAAATCCAGTCAGCATATTCTACCAGCATCTTTAATGAAACCTTTAGTACCAATTTAACCCTGTAAAGGCTGTGCGAGAGCCGGCTAAATCACTGCTACCGCTAACATGCTCAAGATGACGCTGCATGTCACACTATACAGCCTTAAAACGTTAATAAGGAAAGGCCCCTTTCTTTAATAGTTTGTCCAGGAAAGTGACGGAGCCGTCTAGTTACAGACACTGTGCTAAATAAAAATGACTGCCTTCAATTCAGACTAAGATTTTGTATACTTTTAGCATTTTCAAAACACTACAAATATGGAAGATGTTATGTAAAAGAATACTGGGGTTTACTACACATTAAAGAAGAGTGAAATTAGACTTAACTGCACAACATCTGCATTTATGTTCATCACAgttcaaacatatttaatatgcGTCACCAAACAggcatattaaaataaatttaccttTAAAAGCAAAAGTAAATGTTCCTATCAATAAACTAATCAGTTTGACATCTATCCAAAGACTACTGGTGGCCAATATCTGCTTGAAACATTAGCATGCAAGGCTGACTTAATTTAGGTTTCAGTAAAGAGTTAACCAATTAACAGGTGTGTAACACTCGTTTTTTAATCCAATAAAGCTGAAATTGAGGACAGCTCTGAATTACTTACTCTTCTCTTGCTGGCCAAGAAAAAGACCCTGCTTAGTTCATCTTGGAAAATGCAATTAATTGATAGTATATTATTAAATCCTTTTCTTAACAGAAGGGTTTGACGAAGTACAGACAAGGCATTCATAATTAACAAAAGCCAATGAGAGTAAAGCTGGCTAACTTGTCCCCACATTTCACAAACATGTTCTTCCGTTACTGTTCAGATTAGAGttttacaaaatgcaaaaatcatGTTATAAATCAGTTAAATGAGATTGATACCAGCATTCTGGAAAGTTGTCAACCCATCACAAGTAGCTATGGGAGAAAATTAGTGGGCAGATTGTGGGGAGGTCCATTGTAGCATAAACACCCTGACATTTCAGCTGAATTCTTGCtattttactacttttttattACAAGTTTTTGATTGCCATTTCAGTGTCTGCAACCAGGCAAGCTCGTGTTGCTGAAAACAGATAGTGCTTCAGCCATGTTGCACATGTTTACAGGAGTAGACcctggtaaacaaacaaacaaaaaaacaaccatataaacaaacaaaaaagttaaacaatTTTGCCAAATAATGAAATTAACAGCTGTCATTTACATTAGAAATGAACACTTGTCTATCTGTGGGAAATTAGAAAATTTTATCCATTATGCTCAaagcttcacaaaaaaaaaaaaaaaaaaaacgacatgaACAAATCCTTCCTAAATTATAATACAGCCAGTAACTACACACTTCTGGGAGGAGGGGCAGCTTTTAGAGCCATGGAGACAAAAGCAAGGCTTGTTTAGACTCGTCAGagtgtcatttattttcacaCGTACTTTCTCATTCTCacattcgctctctctctcacacacatgcacacactgctCGCAGCATCATCGGAACAGCattataaaactattatacactaAAGTTGATTGGCTCCACTGTTGCCTTTGTGCATAAAATAGAGTATAAAAGCCCTGCGCTCTTTAAGAGTCTCcgtgtgtttatatacattacAGAGAGGGTAGTCTCCCGCCTCCACACTGAGGTAGTTAACAGACCCTTTAAAGGGACACTTCACCCAAAAACCTAATTTACACAAATTCACCCTCCTACCACAAATGTAGTCTGATAACTCTAGATTTCACTGGTGACtgaggttttcttttttcttttaggtTTTTCCATCTGAGTTATGAAGCCTAACAATCATTGGAAAAATATAGCATACCAAAGAGACTTGAACCTATGAGGCCAATGTAGCAAAGGTTCTGCactaaaattaaagaagcaaAACTTCAGACACCAAAACAGTTTCGGCTACAATCTGGGCTAAAGTGGGAGAAATGGGTGAATTATAGTTTTGAGTGAACTGCTCCTTTAGTAACAATAACAGCAACAACAAAAGCACACTAAAGGTTCTTAAATGAACCATTTTTTCTGTAATACCTGACCAATCAGGCCACAAGGTTTACACCTAATAAACCTGCaaaacattatgtaaaaaacattacatttacatgtttattCCATGATGCagctgcagtttaaaaaaaccCTCTGAGCAActacaaaaacatacaaaagtgcaaaaaactTCCGTTATTACATAAAGGATAAGAACGCTTGGGGCAAACAGCAGCACCATCTTCAGTTACACTGAATTCTAAATGGCAGGCTGTTTTCTTTGGGGTGGGGCAGGGCAGTCAGGAGCTGGGGCTCTGGAACACATcagattgttaaaaaaaacagacagaacagCATTAAATAGTGAAAGTAAAGGTGAAGCCTCTGCTGTGGTGATCTTGAGTGGCAGTCTAAGAGTAGCTTGTGTTTCTCTCCGTAAGGCAGGAATAGAAGTGGACCGCTGCATACTAGACCTTACCGCTGGCCtccaggggggggggggggggcgctgTCCAGTGGAAAACACCCAGGTGCTGCGCTTCACCCTCAGAGGGATTTTTCAGGACCACTCTCCAGCCCCTTCCCCTGCTAGTTGGGTAACAAAAGGAACACGGGAATAGAACCCACGAAGAGCCTGTTGTTGGCCACCGATATACACACACCAATCTGCTTTCCTGGTCGAATTTCGTGATTGTTACAcaGCTTTACAGCCTCTAGTGCCGCCTCTTTAGTGCAGAAAGTGACAAATGCATATCCGCGGTTCAGTCCACTCAGCGGGTCCATCATCAGTCGCAGGTCCCAGATGGGCCCAGCTTTTTCAAAAAGAGGCACCAGCTCATCCTCGAACAGGTCTCGTGGGATTTTACCCACAAATATCTGTACAAACatgtacatattttaaacatcttCAGACATCGCTACATGAAGTTAAATGGACTTTTACAGTTTCAATTATATGAAATTCTTAATCAAACAAAGTCATTCATAGTTTTACCATCAACcccacatataaaacaatacacaTACTGGCTTGTGAGTTGGGACAGAAAATAAAGAGGCTTTATTAAC
>TU33277
GTTGATTGTGTGCTAAGATTTCAAGCACTTTACATGAGACAGTGGGAAAAGAGCAAAGTTTTACAGactgatgaagaaaaaaaaccctcaccaGCTTTACAGCCTCTAGTGCCGCCTCTTTAGTGCAGAAAGTGACAAATGCATATCCGCGGTTCAGTCCACTCAGCGGGTCCATCATCAGTCGCAGGTCCCAGATGGGCCCAGCTTTTTCAAAAAGAGGCACCAGCTCATCCTCGAACAGGTCTCGTGGGATTTTACCCACAAATATCTCTGTGCCGATTGTGGGCTGGGTCCCAATGTAGACAGACTCTGGTGGAGGGCCACCGTATTTGCGCTGCCCCGTCGTGACATCGAGTGTGTAGCTGGTTCTCTCAAGCAGAGCtttaatttttgtttcgtctggtCCTTTGTTGGAATCTGTAACTTTGGTCCCTTGCTTCTCCCTCTGTCGATGTGTCTTCATCACGCCACAGAGAAAGGCACTTTtgttTTGCACATGAGATAGGTCACTTTCTTTAAACTGTAACAGAACCTGCAATGCACCTTCCTCTTTAAACTCCTTCAAGGCTTCAATGGCGCGTTCATCCAGATCGCTATGTGCTACGAGGCCTGCTATGTAAATTTCATCTAGCTTTTCAGCAACTTTCTGTGGTAACCCAGCCTCAATTAAAGTCTGGAAGTGCTCAGAGTGGGTAACTGCAGATGTGTCCATCGTTTCCTCCGTACCGTTCCCATTTACATGTTCTGTAGCCATGCCGCCAGAACTGGAGAGGGTGGTGTACGGGGCGCAGCGTCTGTCCGTGTAGGTGAGCCGGGGTTTAGGAGTGCACGCGCAGGAGTCGAGTCTGAAGCCCCGCCGCTCCGCTCCGCCTCATCAGATAATGTAAAATGGCGGAGTGCCGCTCGGCTCACGCTGGACTCAGAGAGCTGCTACGGGGATGCTGGGGGACGCGCGCAGGGGCGGGGTCTGTAGGGGCGG

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33273 True 3191 lncRNA 0.39 3 39131282 39139754
TU33277 False 979 lncRNA 0.44 6 39139295 39144818

Neighbor

gene id symbol gene type direction distance location
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 197432 38928638 ~ 38933850 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 331181 38747477 ~ 38800101 (+)
traf3ip2 LOC107550525 coding upstream 388698 38729312 ~ 38742584 (+)
LOC111191700 LOC108415880 coding upstream 405234 38721677 ~ 38726048 (+)
LOC103028301 LOC108415536,LOC107709524 coding upstream 468642 38645331 ~ 38662640 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding downstream 2714 39147532 ~ 39153428 (+)
rars2 rars2 coding downstream 10808 39155626 ~ 39171955 (+)
LOC103045608 LOC108411441 coding downstream 69363 39214181 ~ 39222236 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 220989 39365807 ~ 39368293 (+)
LOC103042020 LOC108432804 coding downstream 267865 39412683 ~ 39427771 (+)
G24589 NA non-coding upstream 229916 38900986 ~ 38901366 (+)
G24578 NA non-coding upstream 244417 38886443 ~ 38886865 (+)
G24580 NA non-coding upstream 246563 38884087 ~ 38884719 (+)
G24579 NA non-coding upstream 247270 38883288 ~ 38884012 (+)
G24575 rpf2,LOC102791246 non-coding upstream 253625 38868734 ~ 38877657 (+)
G24739 slc35a1,LOC106607707 non-coding downstream 29019 39173837 ~ 39180117 (+)
G24742 slc35a1,LOC106607707 non-coding downstream 39708 39184526 ~ 39192171 (+)
G24743 NA non-coding downstream 42962 39187780 ~ 39188334 (+)
G24748 NA non-coding downstream 97624 39242442 ~ 39251843 (+)
G24775 NA non-coding downstream 202828 39347646 ~ 39347962 (+)
G24719 NA other upstream 85501 39045170 ~ 39045781 (+)
G24583 NA other upstream 184060 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 204300 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 413847 38667509 ~ 38717435 (+)
G24534 NA other upstream 545004 38585439 ~ 38586278 (+)
LOC111196173 NA other downstream 180265 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 244049 39388867 ~ 39397878 (+)
G24972 NA other downstream 674458 39819276 ~ 39825718 (+)
G25601 NA other downstream 3246822 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3352904 42497722 ~ 42516642 (+)

Expression


Co-expression Network