G24739 (slc35a1,LOC106607707)


Basic Information

Item Value
gene id G24739
gene name slc35a1,LOC106607707
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39173837 ~ 39180117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33282
aagGATCCCAAACTAAAATaacttaggaaaaaaaaaaagaaatatttcgAGGAAATTGCTGGCATATGGTTATTTATTGAAAGAGCTCAGTTGTTTATCAATGTGTAATAccccaaagaaaaaaatgtaactgaGGTATAATTAAGCCTTTTCTTAATAAGatggtttatttatatatttaaataatccacacaaaaacagtgattttgtaaaaagaaaaaaaaaaaagtagtcagAGATCTAGGATCTTGTAAAATACTGTTTGTATTCATGGCTGGACTTTTTCACATGTAGAACACATTCTTGTAAACAAACATATAATGTAGTGTGCAAAAATCATATCAAGCCAGATTCATAGTGAACACTATCAATCCTAAACATGAACAGTAAGGCTTTGTTTTTACAGGCTGTTCCTCACAAATCTCATATGCTGCTGATTATTTTACGATATGAACTGAATGTAAGGAGCAAGGCAATCTGCACACTGTGCACAAAACCAAAACAGACAGGAAGACAGAGGCATGCAAAGTGCTGACAAACACTACAAATAGTCAACTATCAGGAAACTGAAACCTAAAACTGAAAAAGTCTATTCTTGCTGCATTCAGTTGTGTGTTATGTATGGCGACATAACAGTGGATGACGGTGGATATCATGAGTACAGTAGATGAATATGTAAAAACATGAACAGGATTGACTACTTCCATCAGCATTATTATCTTActgaatgttgtctgttttgtttGGCCTGTGTGTGGGTGCTATGCGTTCttttacaaatttaaatatttgaggGTGGATTGACGCACCCAGCATATTCAGCAGCACTCTTTTGTCTTTTGATTCTAACACCCATGCACTGATTCAGTCATCTGATAAAGCGATTGTGTCATACATCACATGATACTGATCACATCCAGAGGAGAACCTGTTCTGCATGTTTGGCCCCCTGTTTGACAAACAGTCCGTTTTGTCCTCCAGGATCCAGTGAATCATCACAAAACTTGAAAACCGTAAAATATTTATGCTCATATCCAAGCATGATAAACCCACGAACGAATGTAGCCTTGCTATGTTGATTGAGACTGACAATTAATTAAAGGGATAATCCAGCATTTTTCAGACTGCTCTCCTGTGTAGCTGCTATAGATATCCTGTTAATCAATTATCAGAGCATTTTCATAGTCACGGCAAGTTCGGTTTGGGCAATATGAATATTAAGCTGAGAAATGCTGAAGTATTCCCGTaattattagaaataaaaattcgAAATTTAAAAGCAGAAGGTGATCTCCGGCtgagaaaacataaaaactgaACGTGGTCTTCTTCTCTTCTGTAGCAAAAAGCCGTCCCTATAGAAATGAATGGAACATCTTTATGTTTCCCCGGTGGGGTCAGTACACACAGGACAAACCAAGCAGTGCTTATTCTACaaatccagtaaaaaaaaaagaagaaaaaaaaaggaaaaagaaatgtGGAATCTTTGTCCTAAAAATCCCACTGTCTCTGTATTTTTGGCTGCTCACACTGAAATGAGCTTGTCTTTGGCGGTCTTCTGGCTGTCGGCTTTTGGCAGCACGGTGGTGTCCAGCTTGGGCAGGCCATACAGGTAGATGGACACACAAACCAGTAACGCTCCTGAGGCGAA
>TU33285
TAATTAAGCCTTTTCTTAATAAGatggtttatttatatatttaaataatccacacaaaaacagtgattttgtaaaaagaaaaaaaaaaaagtagtcagAGATCTAGGATCTTGTAAAATACTGTTTGTATTCATGGCTGGACTTTTTCACATGTAGAACACATTCTTGTAAACAAACATATAATGTAGTGTGCAAAAATCATATCAAGCCAGATTCATAGTGAACACTATCAATCCTAAACATGAACAGTAAGGCTTTGTTTTTACAGGCTGTTCCTCACAAATCTCATATGCTGCTGATTATTTTACGATATGAACTGAATGTAAGGAGCAAGGCAATCTGCACACTGTGCACAAAACCAAAACAGACAGGAAGACAGAGGCATGCAAAGTGCTGACAAACACTACAAATAGTCAACTATCAGGAAACTGAAACCTAAAACTGAAAAAGTCTATTCTTGCTGCATTCAGTTGTGTGTTATGTATGGCGACATAACAGTGGATGACGGTGGATATCATGAGTACAGTAGATGAATATGTAAAAACATGAACAGGATTGACTACTTCCATCAGCATTATTATCTTActgaatgttgtctgttttgtttGGCCTGTGTGTGGGTGCTATGCGTTCttttacaaatttaaatatttgaggGTGGATTGACGCACCCAGCATATTCAGCAGCACTCTTTTGTCTTTTGATTCTAACACCCATGCACTGATTCAGTCATCTGATAAAGCGATTGTGTCATACATCACATGATACTGATCACATCCAGAGGAGAACCTGTTCTGCATGTTTGGCCCCCTGTTTGACAAACAGTCCGTTTTGTCCTCCAGGATCCAGTGAATCATCACAAAACTTGAAAACCGTAAAATATTTATGCTCATATCCAAGCATGATAAACCCACGAACGAATGTAGCCTTGCTATGTTGATTGAGACTGACAATTAATTAAAGGGATAATCCAGCATTTTTCAGACTGCTCTCCTGTGTAGCTGCTATAGATATCCTGTTAATCAATTATCAGAGCATTTTCATAGTCACGGCAAGTTCGGTTTGGGCAATATGAATATTAAGCTGAGAAATGCTGAAGTATTCCCGTaattattagaaataaaaattcgAAATTTAAAAGCAGAAGGTGATCTCCGGCtgagaaaacataaaaactgaACGTGGTCTTCTTCTCTTCTGTAGCAAAAAGCCGTCCCTATAGAAATGAATGGAACATCTTTATGTTTCCCCGGTGGGGTCAGTACACACAGGACAAACCAAGCAGTGCTTATTCTACaaatccagtaaaaaaaaaagaagaaaaaaaaaggaaaaagaaatgtGGAATCTTTGTCCTAAAAATCCCACTGTCTCTGTATTTTTGGCTGCTCACACTGAAATGAGCTTGTCTTTGGCGGTCTTCTGGCTGTCGGCTTTTGGCAGCACGGTGGTGTCCAGCTTGGGCAGGCCATACAGGTAGATGGACACACAAACCAGTAACGCTCCTGAGGCGAAGGTCAGAGTGATCTGTAAGCCGAAGAGAGTGACGGAGGCAACGGTCGACAGCACGATAGCCGCAGCGGCACTGAAACCCTTCATGATGTTATCAGTGTACTTCACCACCACTGAGGTGTAGAGACCACCTACACTCGCTAaaaAGACAACGAAGCAGACCCAGGGTGTGTACCCATAAAAGAACCCTTTCTCCATCACCTGCGGCCCATCAGTCATACAGACTCCTGCCAGCGTCACAACAATGCCTGACAGGTACATCTGAATATTCCTCACCCACAGAGACGTATCAGAGCTCTTCAGCACCTTCTCAAAATACACACCTGCAAACCCGGAACACAACACAGCAACAGCAACGGCCACAAACCCAACAAATGGGTTCTGCT

Function

symbol description
slc35a1 Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIf. Orthologous to human SLC35A1 (solute carrier family 35 member A1).

NR:

description
PREDICTED: CMP-sialic acid transporter-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33282 False 1654 lncRNA 0.42 2 39173837 39175538
TU33285 True 1899 lncRNA 0.39 5 39173975 39180117

Neighbor

gene id symbol gene type direction distance location
rars2 rars2 coding upstream 1882 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 20409 39147532 ~ 39153428 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 239987 38928638 ~ 38933850 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 373736 38747477 ~ 38800101 (+)
traf3ip2 LOC107550525 coding upstream 431253 38729312 ~ 38742584 (+)
LOC103045608 LOC108411441 coding downstream 34064 39214181 ~ 39222236 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 185690 39365807 ~ 39368293 (+)
LOC103042020 LOC108432804 coding downstream 232566 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 488393 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 514536 39694653 ~ 39697487 (+)
G24735 LOC101072348,LOC108415889,LOC103369403 non-coding upstream 29019 39131282 ~ 39144818 (+)
G24589 NA non-coding upstream 272471 38900986 ~ 38901366 (+)
G24578 NA non-coding upstream 286972 38886443 ~ 38886865 (+)
G24580 NA non-coding upstream 289118 38884087 ~ 38884719 (+)
G24579 NA non-coding upstream 289825 38883288 ~ 38884012 (+)
G24742 slc35a1,LOC106607707 non-coding downstream 4409 39184526 ~ 39192171 (+)
G24743 NA non-coding downstream 7663 39187780 ~ 39188334 (+)
G24748 NA non-coding downstream 62325 39242442 ~ 39251843 (+)
G24775 NA non-coding downstream 167529 39347646 ~ 39347962 (+)
G24772 tmed10 non-coding downstream 202125 39382242 ~ 39387475 (+)
G24719 NA other upstream 128056 39045170 ~ 39045781 (+)
G24583 NA other upstream 226615 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 246855 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 456402 38667509 ~ 38717435 (+)
G24534 NA other upstream 587559 38585439 ~ 38586278 (+)
LOC111196173 NA other downstream 144966 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 208750 39388867 ~ 39397878 (+)
G24972 NA other downstream 639159 39819276 ~ 39825718 (+)
G25601 NA other downstream 3211523 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3317605 42497722 ~ 42516642 (+)

Expression


Co-expression Network