G24748


Basic Information

Item Value
gene id G24748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39242442 ~ 39251843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33307
tcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggctgaGCAGCAGTGTGCTACAGATGGAGCAGGACTTTCTCAAACTATACTCCCCAAGAACAATGGGTGCCTCCACATCCTCATCCATGATGTCATTATTGTAGCATTAATGAGGTCAGAATtgagaaacaaagagagggaaaggtgagaggtgaaagagagaggggggctcAGGTGTTTAGGAAGATATTGTTTTGATGATGCAGCTTgtgtaaataagtaaacaaatcctcaacaaaaaaagaaactaaaagtaaaattgTTCTGCACgtcaattttttttctgaatttaacACATCGAAACTAaataaatttttctttttttatatttacgttaaataattgtttaaataagtatttaacTTGTTTTGCAAAATGCTGAATAATTACAGATCACTTTAGTTTATTTTGAACACACATTTAATGGTTTTATTCCAATCTGTTAAATccacaaataaacagtaattatgTTGTAAAATGTGCAGAAGGGTGCCTCGGTAGAGGATTTGAACTTATctacattacttaaatatttatatataaaaaaacattttagccaAGGGTGTCCACTCAATTTTGAGATTgaacattaatatattattattataaaaaaaaatgtttatggtCTGAAAAGGGGGTGGGTCATTTACTTAGTTTAAACTATGTTTGAGGAGTGGCATGAGTAAGCATAGATTCAggacaaaagagagaaaaaaaaatagtggggGGAAAAAGATTCTTATTTTCACCTCCCCATAAGCCCCGCCTCCTCCAACCCTGCACCTGCCCCTCTAAACACACACCGGAGTCAGACACACTTGCTGGGCCACTGGCTGAGGTTTGCGTGTGCTTCCTGCTCTTCCACAGAGCTCTGTGATGAGGAGTCCTACAGTGTGAAGGGGAGAACAAGATCCATGGATACAGGATGGACACGGGTCGCCACGGCGACATCTTTGCACCAGGCCTGTGCTGAGTGTCGCCGCAATGACAATTTTCCAAATATCAGCCCCCAAATTCCACCCTATTCAgactcttacacactcactcatacactcgcacactcacacattgCAGCTGGCGCAAAAAATTGTACTCAATTCTCTGCTCCTTACAATTTCCACTTCGTTCATTTGTTTGCTTGTCTTGCGGTGGGTGGAAGAGGATGAAGAACTGGTTTCTTTCTTTTAGAATTTTTCTGTTTGTGAAAATAAGACTTCACCATCAACTGTCCATGCTACTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33307 True 1322 lncRNA 0.46 2 39242442 39251843

Neighbor

gene id symbol gene type direction distance location
LOC103045608 LOC108411441 coding upstream 20206 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 70487 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 89014 39147532 ~ 39153428 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 308592 38928638 ~ 38933850 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 442341 38747477 ~ 38800101 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 113964 39365807 ~ 39368293 (+)
LOC103042020 LOC108432804 coding downstream 160840 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 416667 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 442810 39694653 ~ 39697487 (+)
c3h6orf58 NA coding downstream 733302 39985145 ~ 39992197 (+)
G24742 slc35a1,LOC106607707 non-coding upstream 50271 39184526 ~ 39192171 (+)
G24743 NA non-coding upstream 54108 39187780 ~ 39188334 (+)
G24739 slc35a1,LOC106607707 non-coding upstream 62325 39173837 ~ 39180117 (+)
G24735 LOC101072348,LOC108415889,LOC103369403 non-coding upstream 97624 39131282 ~ 39144818 (+)
G24589 NA non-coding upstream 341076 38900986 ~ 38901366 (+)
G24775 NA non-coding downstream 95803 39347646 ~ 39347962 (+)
G24772 tmed10 non-coding downstream 130399 39382242 ~ 39387475 (+)
G24790 zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374 non-coding downstream 153973 39405816 ~ 39408899 (+)
G24796 rad51 non-coding downstream 185139 39436982 ~ 39439002 (+)
G24815 NA non-coding downstream 274643 39526486 ~ 39530263 (+)
G24719 NA other upstream 196661 39045170 ~ 39045781 (+)
G24583 NA other upstream 295220 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 315460 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 525007 38667509 ~ 38717435 (+)
G24534 NA other upstream 656164 38585439 ~ 38586278 (+)
LOC111196173 NA other downstream 73240 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 137024 39388867 ~ 39397878 (+)
G24972 NA other downstream 567433 39819276 ~ 39825718 (+)
G25601 NA other downstream 3139797 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3245879 42497722 ~ 42516642 (+)

Expression


Co-expression Network