eif2b2 (eif2b2,LOC107697194,LOC107685362)


Basic Information

Item Value
gene id eif2b2
gene name eif2b2,LOC107697194,LOC107685362
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39388867 ~ 39397878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33356
CTGCGTTcatatgtgtatgttttctttttgtcacCAGAGGGCACCACAGACAACATAGCCATGCAGGCTCTGGAGCACATCCACTCTAATGAAGTCATCATGACCATCGGCCGCTCGCGCACCGTGGAGGCTTTTCTGAAGGATGCAGCGCGCAAACGCAAATTCCACGTTATCGTAGCAGAGTGCGCTCCGTTCTGCCAGGGTCATGAGATGGCCACCAGTCTGTCTAAAGACGGAATTGAAACCACAGTGATTCCTGACGCCGCCATCTTCGCAGTGATGTCCAGAGTCAATAAGGTGATTATTGGTACGCAGACGGTTTTGGCAAATGGAGGATTGAGGGCGGTGAacggcacacacacactggcactCGCTGCCAAACACCACTCCACTCCACTCATCGTGTGCGCTCCCATGTTCAAACTCTCACCACAGtttccaAATGAAGAGGACACGTTCCACAAGTTTGTTTCACCACATGAAGTGCTTCCCTTTACTGAAGGTGAGATCCTGTCGAAGGTGAATGCTCACTGTCCCGTGTTTGATTATGTTCCGCCAGAGTTAATAACGCTGTTTATTTCCAATATTGGTGGAAACGCCCCATCTTACATCTACCGTCTGATGAGTGAACTTTACCACCCTGAAGACCAC
>XM_022685382.1
tactttaacttttacagaagtattttaaaatcTAGTATCTTCACTTTTATCTGAGTAACGAGTGTAAATACTGTTTGAATACATAAGCCAACACGCGTGAGCTCTCTTGAACTACATTACCCAAGATACACCGCGCGGCTGATGCAAAGGCTCTTTCTATGACAACTTCCGTAAAGTAGACCACCAGGCTGAACTGGGAGCAGTCAGACATTGGAATAATTTTGACCCGTTACTGACCCGTTCAGAGACAGGAGACATGCCGGGCGCGGATAAGGAGACGGACCTGTGTGAGCGGATCGAGGCGTTTCTGGCGGAGCTGAAGCTCGGGGACCGGGGCTCCGGGGAGACCGCCCGCAGCACCGCGGCGCTGCTGCGCAGGATCACCGCACAGGCGCGCTGGAGCAGCGCAGGTGATCTGATGGAGGTCATCCGTAAAGAAGGCAGAAGGATGACCGCTGCTCAGCCCTCAGAGACCACCGTGGGCAACATGGTTCGCCGCATCCTCAAAATTATTCGAGAGGAATATGCAAGGTCCCGTGGCAGCAGCGAGGAGGCAGATCAGCAGGAGTCTCTGCACAAGCTGCTCACGTCCGGCGGCTCCAGTGAGGAGAACTTCAGACAGCACTTCCCTCCACTCAAAGCTAACATCATTGAGGCCATCAACGAGCTGCTCACTGAGCTGGAGGGCACCACAGACAACATAGCCATGCAGGCTCTGGAGCACATCCACTCTAATGAAGTCATCATGACCATCGGCCGCTCGCGCACCGTGGAGGCTTTTCTGAAGGATGCAGCGCGCAAACGCAAATTCCACGTTATCGTAGCAGAGTGCGCTCCGTTCTGCCAGGGTCATGAGATGGCCACCAGTCTGTCTAAAGACGGAATTGAAACCACAGTGATTCCTGACGCCGCCATCTTCGCAGTGATGTCCAGAGTCAATAAGGTGATTATTGGTACGCAGACGGTTTTGGCAAATGGAGGATTGAGGGCGGTGAacggcacacacacactggcactCGCTGCCAAACACCACTCCACTCCACTCATCGTGTGCGCTCCCATGTTCAAACTCTCACCACAGtttccaAATGAAGAGGACACGTTCCACAAGTTTGTTTCACCACATGAAGTGCTTCCCTTTACTGAAGGTGAGATCCTGTCGAAGGTGAATGCTCACTGTCCCGTGTTTGATTATGTTCCGCCAGAGTTAATAACGCTGTTTATTTCCAATATTGGTGGAAACGCCCCATCTTACATCTACCGTCTGATGAGTGAACTTTACCACCCTGAAGACCACGagctgtaaaaatgtataaataaataattaaaagcatttttgttctgta

Function

symbol description
eif2b2 Predicted to enable translation initiation factor activity. Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be part of eukaryotic translation initiation factor 2B complex. Human ortholog(s) of this gene implicated in leukoencephalopathy with vanishing white matter. Orthologous to human EIF2B2 (eukaryotic translation initiation factor 2B subunit beta).

NR:

description
translation initiation factor eIF-2B subunit beta

GO: NA

KEGG:

id description
K03754 EIF2B2; translation initiation factor eIF-2B subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU33356 False 651 TUCP 0.45 5 39393842 39397829
XM_022685382.1 True 1346 mRNA 0.51 8 39388867 39397878

Neighbor

gene id symbol gene type direction distance location
LOC103043278 LOC103043278,LOC108432833 coding upstream 20574 39365807 ~ 39368293 (+)
LOC103045608 LOC108411441 coding upstream 166631 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 216912 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 235439 39147532 ~ 39153428 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 455017 38928638 ~ 38933850 (+)
LOC103042020 LOC108432804 coding downstream 14805 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 270632 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 296775 39694653 ~ 39697487 (+)
c3h6orf58 NA coding downstream 587267 39985145 ~ 39992197 (+)
cspp1 NA coding downstream 913063 40310941 ~ 40319844 (+)
G24772 tmed10 non-coding upstream 1392 39382242 ~ 39387475 (+)
G24775 NA non-coding upstream 40905 39347646 ~ 39347962 (+)
G24748 NA non-coding upstream 137024 39242442 ~ 39251843 (+)
G24742 slc35a1,LOC106607707 non-coding upstream 196696 39184526 ~ 39192171 (+)
G24743 NA non-coding upstream 200533 39187780 ~ 39188334 (+)
G24790 zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374 non-coding downstream 7938 39405816 ~ 39408899 (+)
G24796 rad51 non-coding downstream 39104 39436982 ~ 39439002 (+)
G24815 NA non-coding downstream 128608 39526486 ~ 39530263 (+)
G24833 NA non-coding downstream 223975 39621853 ~ 39626693 (+)
G24834 LOC108432800 non-coding downstream 239525 39637403 ~ 39638604 (+)
LOC111196173 NA other upstream 47896 39325083 ~ 39340971 (+)
G24719 NA other upstream 343086 39045170 ~ 39045781 (+)
G24583 NA other upstream 441645 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 461885 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 671432 38667509 ~ 38717435 (+)
G24972 NA other downstream 421398 39819276 ~ 39825718 (+)
G25601 NA other downstream 2993762 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3099844 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3861742 43259620 ~ 43262099 (+)
rps29 NA other downstream 3962591 43360469 ~ 43363444 (+)

Expression


Co-expression Network