G24790 (zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374)


Basic Information

Item Value
gene id G24790
gene name zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39405816 ~ 39408899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33365
CCGCCATCTCTGTAGCTCCGTCCATACGATGAGCTCGATCTTTCCTGACCTCTTGAGATTTCTGACGACCTATAACTGTCTGTACTTCTTTCTGAGTTGCGGCTGGAAAAAGTCTGCCGTGACCTGTCAGATGCAGAGCGGCCTGCTAAAGAGCGCAGTGGGCCAGAAGGTATGGTTTCTTCAGTGATGAGATCATCGTCCAGGTCGGGTTTGATGTCTATGATGGCCTCCGCAGAGACAGGCTCGACCAGGGGCTTTACAGCAGATGTTAATCGAGAGGAGGACTTGTCAGAGGAAGCACGTCTGCTGTGTTGTTCATGGGCAGAGCTAGAAACTCGTCCCTCTAGTCTATCGGAGCGCGAGCTGGACACAGCGAGACCTCGAGACTCCTCTCCTCTGCGCTCATCTCGAGAAGATGTGCTGGTTTCTGAATGAAGTAGTTGAGGGCGCATTGAGGACggctCTACTGCAGCGGATCTCAGCTTCTCCAGGACACCGTGTAACCAGACTGTGAACTTGATGGTGTTGTTGCCCAAAAACAGAGACAGGTCATCTGCCATCTGCTGCGCATTCTTCTTATTGGCCACCATCACCATGATGTAGTCTGGAAGCTCCTCATCCACATAAGCTCCCAGCTCCTGCAACTTCCCTTTAATAGCAGTCCGTATTTTCTTGCTGATCTCCGTCCCGATTTCCATCCTTGAAAATCTTAGTGGTAACACACTAATCTATATTTGGTAAATTGAGCTTATTTAACACAACCCAAATGTAAAAATCTGCCGTTAGCCGTGTATGGGTCTGTTATGAGGCCATGAATGTTAG

Function

symbol description
zc3h14 Predicted to enable poly(A) binding activity. Predicted to be involved in negative regulation of mRNA polyadenylation and regulation of mRNA stability. Predicted to be located in nuclear speck. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ZC3H14 (zinc finger CCCH-type containing 14).

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33365 True 822 lncRNA 0.50 6 39405816 39408899

Neighbor

gene id symbol gene type direction distance location
LOC103043278 LOC103043278,LOC108432833 coding upstream 37523 39365807 ~ 39368293 (+)
LOC103045608 LOC108411441 coding upstream 183580 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 233861 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 252388 39147532 ~ 39153428 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 471966 38928638 ~ 38933850 (+)
LOC103042020 LOC108432804 coding downstream 3784 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 259611 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 285754 39694653 ~ 39697487 (+)
c3h6orf58 NA coding downstream 576246 39985145 ~ 39992197 (+)
cspp1 NA coding downstream 902042 40310941 ~ 40319844 (+)
G24772 tmed10 non-coding upstream 18341 39382242 ~ 39387475 (+)
G24775 NA non-coding upstream 57854 39347646 ~ 39347962 (+)
G24748 NA non-coding upstream 153973 39242442 ~ 39251843 (+)
G24742 slc35a1,LOC106607707 non-coding upstream 213645 39184526 ~ 39192171 (+)
G24743 NA non-coding upstream 217482 39187780 ~ 39188334 (+)
G24796 rad51 non-coding downstream 28083 39436982 ~ 39439002 (+)
G24815 NA non-coding downstream 117587 39526486 ~ 39530263 (+)
G24833 NA non-coding downstream 212954 39621853 ~ 39626693 (+)
G24834 LOC108432800 non-coding downstream 228504 39637403 ~ 39638604 (+)
G24837 NA non-coding downstream 239489 39648388 ~ 39653019 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 7938 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 64845 39325083 ~ 39340971 (+)
G24719 NA other upstream 360035 39045170 ~ 39045781 (+)
G24583 NA other upstream 458594 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 478834 38925696 ~ 38926982 (+)
G24972 NA other downstream 410377 39819276 ~ 39825718 (+)
G25601 NA other downstream 2982741 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3088823 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3850721 43259620 ~ 43262099 (+)
rps29 NA other downstream 3951570 43360469 ~ 43363444 (+)

Expression


Co-expression Network